Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0622 ATGAATTCAGGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTAAAGATATTAATTGTTGCAGCAGTTGTTTCTTTCCTTCTGGCTCTGATAAATGGAGAGACAGGCGTTACAGCATTTTTGGAGCCTTCAGTAATATTACTAATATTGGCTGCAAATGCAGCAGTAGGAGTGATTACGGAAACAAATGCTGAAAAGGCTCTTGAGGAACTACGGGCATACCAGGCAGATGTTGCTACCGTGATGAGAAATGGTTGCTTTTCAATACTTCCGGCTACTGAGCTTGTTCCTGGCGACATAGTAGAAGTTGTTGTGGGTTGCAAAATTCCAGCTGATATGAGAATGATTGAGATGCTAAGTAATCAGATACGCGTTGATCAAGCAATTCTCACAGGTGAGAGCTGCTCTGTTGAAAAAGAGCTCGAGTCCACAAGAGCAATAAATGCTGTATATCAAGACAAGACAAATATTCTTTTCTCTGGCACAGTGGTGGTTGCTGGCAGGGCTCGGGCTATTGTGGTAGGAGTTGGTGCAAATACTGCCATGGGAAATATACGAGATTCTATTTTGCAAACAGATGATGAGGCGACACCATTGAAAAAGAAGCTAGATGAATTTGGTACTTTTTTGGCAAAGGTTATTGCTGGAATTTGTGCACTTGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCTCATGGTGGGGTTGTGAGTGGTGCAATACATTACTTTAAGATTGCAGTTGCTCTTGCCGTTGCGGCCATTCCTGAAGGACTTCCTGCTGTCGTTACAACGTGTTTGGCTCTTGGCACCAAGCGAATGGCACGCCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAAACTTTGGGCTGTACTACTGTTATATGTAGTGACAAGACTGGAACTTTGACTACCAATATGATGTCCGTCTCCAAGATTTGTGTGGTCCATTCTGTTTTGCATGGTCCACAGCTTTCTGAGTATAGTGTCAGTGGTACAACGTATGCTCCTGATGGTATTATTTTTGACAGCTCGGGAGTACAGCTTGAGTTTCCAGCACAATTGCCTTGTATTCTACACATGGCAATGGGCTCTGCCCTCTGCAACGAGTCCACTTTGCAATATAACCCAGACAAGGGGAGCTATGAAAAAATTGGTGAATCAACTGAAGTAGCATTGCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTACTTCAATGCCGTCTGCTCTAAATATGCTAAGCAAGCATGAACGAGCATCCTACTGTAACCACCACTGGGAGAGCCAATTCAAAAAGATTTCGGTACTGGAATTTTCTCGTGATCGCAAGATGATGAGCATTTTATGTAGCAGAAATCAGTCACATATCTTATTCTCCAAGGGTGCTCCTGAGAGCATTATCTCAAGATGCTCAAGTATTCTTTGCAATGAAGATGGTTCCACCAGTGTTTTAACTGCTAGTATTCGTACTGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGATGCCTGGCTATTGCATTTAAATTGATTCCTGCGAGTCAGCAGAGTTTATCCTTTGGTGATGAGCAAGACCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCAAGAGAGGAAGTGAGAAATGCTATGCTTTCATGCATGACTGCCGGAATACGTGTTATAGTTGTAACCGGAGACAATAAGTCAACTGCGGAATCACTTTGCCGCAAGATTGGTGCTTTTGATCACTTGGTAGATCTAACCGATCATTCTTTTACTGCTTCTGAATTTGAAGAGCTACCTGCTATGCAACAAACAATCGCATTGCAACGAATGGCTCTATTCACCAGGGTCGAACCTTCTCATAAGAGAATGCTTGTGGAGGCCTTACAACATCAGAATGAAGTGGTTGCTATGACAGGTGATGGCGTCAATGATGCACCTGCGTTGAAGAAAGCAGATATAGGAATTGCTATGGGTTCAGGAACAGCAGTTGCTAAGAGTGCTTCTGATATGGTTTTGGCTGATGACAATTTTGCTTCTATTGTTGCGGCTGTTGCAGAGGGCCGAGCTATCTACAATAACACCAAGCAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTTTGTATATTTGTGGCAGCTGTTCTTGGAATACCAGAGACTCTTGCCCCTGTGCAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACAGCAATTGGATTTAATAAACAAGACTCTGATGTAATGAAAGCCAAGCCACGAAAGGTGAATGAAGCTGTGGTGACTGGGTGGTTGTTCTTTCGTTATTTGGTAATTGGAGCTTATGTCGGTCTTGCAACAATTGCTGGCTTCATATGGTGGTTTATATACTCTGACAGCGGTCCTAAGCTAACTTACAATGAATTGATGAATTTTGATACTTGCTCAACAAGAGAGACAACATACCCTTGCAGTATATTTGAGGATCGGCACCCATCGACTGTGTCTATGACTGTACTAGTTGTTGTCGAGATGTTCAATGCTTTAAATAATCTAAGTGAAAATCAATCTCTTCTTGTTATTCCTCCCTGGAGTAATTTATGGCTCGTTGCTTCCATTTTCTTAACTATGATCCTTCACATGCTGATTATGTATGTGCGACCACTCGCTGTTCTTTTCTCTGTAACGCCACTATCTTGGGCTGAGTGGACTCTGGTTTTGTATCTTTCGTTTCCAGTTATTATAATTGATGAGATACTAAAGTTCTTTTCACGACGCTCTAGTGGCAGGATCAGGCTTCCATTCAGATTCAGAAGGCATGATTTACTTCCAAAGAAGGAATTGCGTGACAAGTAG 2883 42.25 MNSGAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADVATVMRNGCFSILPATELVPGDIVEVVVGCKIPADMRMIEMLSNQIRVDQAILTGESCSVEKELESTRAINAVYQDKTNILFSGTVVVAGRARAIVVGVGANTAMGNIRDSILQTDDEATPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVVSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQLSEYSVSGTTYAPDGIIFDSSGVQLEFPAQLPCILHMAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFTSMPSALNMLSKHERASYCNHHWESQFKKISVLEFSRDRKMMSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTSVLTASIRTELEARFQSFAGNEMLRCLAIAFKLIPASQQSLSFGDEQDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLTDHSFTASEFEELPAMQQTIALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFIYSDSGPKLTYNELMNFDTCSTRETTYPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIFLTMILHMLIMYVRPLAVLFSVTPLSWAEWTLVLYLSFPVIIIDEILKFFSRRSSGRIRLPFRFRRHDLLPKKELRDK 960
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 4460229 4490954 - MC08g0551 Mch8g0622 694243
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0622 960 SUPERFAMILY Calcium ATPase, transmembrane domain M 5 936 IPR023298 -
Mch8g0622 960 SFLD C1.7: P-type atpase like 284 701 - -
Mch8g0622 960 SUPERFAMILY Calcium ATPase, transduction domain A 82 193 IPR008250 -
Mch8g0622 960 Gene3D - 13 934 - -
Mch8g0622 960 FunFam Calcium-transporting ATPase, putative 167 299 - -
Mch8g0622 960 Gene3D - 4 195 - -
Mch8g0622 960 NCBIfam calcium-translocating P-type ATPase, SERCA-type 11 803 IPR005782 GO:0005388(InterPro)|GO:0006816(InterPro)|GO:0016020(InterPro)
Mch8g0622 960 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 310 547 IPR023299 GO:0000166(InterPro)
Mch8g0622 960 Pfam haloacid dehalogenase-like hydrolase 540 663 - -
Mch8g0622 960 Pfam Cation transporter/ATPase, N-terminus 5 30 IPR004014 -
Mch8g0622 960 PRINTS H+-transporting ATPase (proton pump) signature 621 637 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch8g0622 960 PRINTS H+-transporting ATPase (proton pump) signature 649 665 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch8g0622 960 PRINTS H+-transporting ATPase (proton pump) signature 680 705 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch8g0622 960 PANTHER CALCIUM-TRANSPORTING ATPASE 5 936 - GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER)
Mch8g0622 960 Gene3D - 313 550 IPR023299 GO:0000166(InterPro)
Mch8g0622 960 FunFam Calcium-transporting ATPase 70 195 - -
Mch8g0622 960 FunFam Sodium/potassium-transporting ATPase subunit alpha 542 688 - -
Mch8g0622 960 SFLD p-type atpase 284 701 IPR044492 -
Mch8g0622 960 Pfam Cation transporting ATPase, C-terminus 733 932 IPR006068 -
Mch8g0622 960 Pfam Cation transport ATPase (P-type) 373 482 - -
Mch8g0622 960 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 645 937 - -
Mch8g0622 960 PRINTS P-type cation-transporting ATPase superfamily signature 543 554 - -
Mch8g0622 960 PRINTS P-type cation-transporting ATPase superfamily signature 672 684 - -
Mch8g0622 960 PRINTS P-type cation-transporting ATPase superfamily signature 131 145 - -
Mch8g0622 960 PRINTS P-type cation-transporting ATPase superfamily signature 565 575 - -
Mch8g0622 960 PRINTS P-type cation-transporting ATPase superfamily signature 649 668 - -
Mch8g0622 960 PRINTS P-type cation-transporting ATPase superfamily signature 303 317 - -
Mch8g0622 960 Pfam E1-E2 ATPase 80 282 - -
Mch8g0622 960 CDD P-type_ATPase_SERCA 4 934 - -
Mch8g0622 960 ProSitePatterns E1-E2 ATPases phosphorylation site. 305 311 IPR018303 -
Mch8g0622 960 NCBIfam HAD-IC family P-type ATPase 50 325 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch8g0622 960 NCBIfam HAD-IC family P-type ATPase 619 737 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch8g0622 960 SUPERFAMILY HAD-like 536 697 IPR036412 -
Mch8g0622 960 Coils Coil 69 89 - -
Mch8g0622 960 Gene3D - 300 693 IPR023214 -
Mch8g0622 960 FunFam Calcium-transporting ATPase 313 550 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0360 Mch-Chr3:5900585 Mch8g0622 Mch-Chr8:4460229 4.36E-266 dispersed
Mch8g0622 Mch-Chr8:4460229 Mch8g2603 Mch-Chr8:29182114 8.34E-88 dispersed
Mch8g0622 Mch-Chr8:4460229 Mch9g0907 Mch-Chr9:7172631 3.38E-86 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0622 K05853 - csv:101211345 1779.99