Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch8g0622 | ATGAATTCAGGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTAAAGATATTAATTGTTGCAGCAGTTGTTTCTTTCCTTCTGGCTCTGATAAATGGAGAGACAGGCGTTACAGCATTTTTGGAGCCTTCAGTAATATTACTAATATTGGCTGCAAATGCAGCAGTAGGAGTGATTACGGAAACAAATGCTGAAAAGGCTCTTGAGGAACTACGGGCATACCAGGCAGATGTTGCTACCGTGATGAGAAATGGTTGCTTTTCAATACTTCCGGCTACTGAGCTTGTTCCTGGCGACATAGTAGAAGTTGTTGTGGGTTGCAAAATTCCAGCTGATATGAGAATGATTGAGATGCTAAGTAATCAGATACGCGTTGATCAAGCAATTCTCACAGGTGAGAGCTGCTCTGTTGAAAAAGAGCTCGAGTCCACAAGAGCAATAAATGCTGTATATCAAGACAAGACAAATATTCTTTTCTCTGGCACAGTGGTGGTTGCTGGCAGGGCTCGGGCTATTGTGGTAGGAGTTGGTGCAAATACTGCCATGGGAAATATACGAGATTCTATTTTGCAAACAGATGATGAGGCGACACCATTGAAAAAGAAGCTAGATGAATTTGGTACTTTTTTGGCAAAGGTTATTGCTGGAATTTGTGCACTTGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCTCATGGTGGGGTTGTGAGTGGTGCAATACATTACTTTAAGATTGCAGTTGCTCTTGCCGTTGCGGCCATTCCTGAAGGACTTCCTGCTGTCGTTACAACGTGTTTGGCTCTTGGCACCAAGCGAATGGCACGCCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAAACTTTGGGCTGTACTACTGTTATATGTAGTGACAAGACTGGAACTTTGACTACCAATATGATGTCCGTCTCCAAGATTTGTGTGGTCCATTCTGTTTTGCATGGTCCACAGCTTTCTGAGTATAGTGTCAGTGGTACAACGTATGCTCCTGATGGTATTATTTTTGACAGCTCGGGAGTACAGCTTGAGTTTCCAGCACAATTGCCTTGTATTCTACACATGGCAATGGGCTCTGCCCTCTGCAACGAGTCCACTTTGCAATATAACCCAGACAAGGGGAGCTATGAAAAAATTGGTGAATCAACTGAAGTAGCATTGCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTACTTCAATGCCGTCTGCTCTAAATATGCTAAGCAAGCATGAACGAGCATCCTACTGTAACCACCACTGGGAGAGCCAATTCAAAAAGATTTCGGTACTGGAATTTTCTCGTGATCGCAAGATGATGAGCATTTTATGTAGCAGAAATCAGTCACATATCTTATTCTCCAAGGGTGCTCCTGAGAGCATTATCTCAAGATGCTCAAGTATTCTTTGCAATGAAGATGGTTCCACCAGTGTTTTAACTGCTAGTATTCGTACTGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGATGCCTGGCTATTGCATTTAAATTGATTCCTGCGAGTCAGCAGAGTTTATCCTTTGGTGATGAGCAAGACCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCAAGAGAGGAAGTGAGAAATGCTATGCTTTCATGCATGACTGCCGGAATACGTGTTATAGTTGTAACCGGAGACAATAAGTCAACTGCGGAATCACTTTGCCGCAAGATTGGTGCTTTTGATCACTTGGTAGATCTAACCGATCATTCTTTTACTGCTTCTGAATTTGAAGAGCTACCTGCTATGCAACAAACAATCGCATTGCAACGAATGGCTCTATTCACCAGGGTCGAACCTTCTCATAAGAGAATGCTTGTGGAGGCCTTACAACATCAGAATGAAGTGGTTGCTATGACAGGTGATGGCGTCAATGATGCACCTGCGTTGAAGAAAGCAGATATAGGAATTGCTATGGGTTCAGGAACAGCAGTTGCTAAGAGTGCTTCTGATATGGTTTTGGCTGATGACAATTTTGCTTCTATTGTTGCGGCTGTTGCAGAGGGCCGAGCTATCTACAATAACACCAAGCAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTTTGTATATTTGTGGCAGCTGTTCTTGGAATACCAGAGACTCTTGCCCCTGTGCAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACAGCAATTGGATTTAATAAACAAGACTCTGATGTAATGAAAGCCAAGCCACGAAAGGTGAATGAAGCTGTGGTGACTGGGTGGTTGTTCTTTCGTTATTTGGTAATTGGAGCTTATGTCGGTCTTGCAACAATTGCTGGCTTCATATGGTGGTTTATATACTCTGACAGCGGTCCTAAGCTAACTTACAATGAATTGATGAATTTTGATACTTGCTCAACAAGAGAGACAACATACCCTTGCAGTATATTTGAGGATCGGCACCCATCGACTGTGTCTATGACTGTACTAGTTGTTGTCGAGATGTTCAATGCTTTAAATAATCTAAGTGAAAATCAATCTCTTCTTGTTATTCCTCCCTGGAGTAATTTATGGCTCGTTGCTTCCATTTTCTTAACTATGATCCTTCACATGCTGATTATGTATGTGCGACCACTCGCTGTTCTTTTCTCTGTAACGCCACTATCTTGGGCTGAGTGGACTCTGGTTTTGTATCTTTCGTTTCCAGTTATTATAATTGATGAGATACTAAAGTTCTTTTCACGACGCTCTAGTGGCAGGATCAGGCTTCCATTCAGATTCAGAAGGCATGATTTACTTCCAAAGAAGGAATTGCGTGACAAGTAG | 2883 | 42.25 | MNSGAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADVATVMRNGCFSILPATELVPGDIVEVVVGCKIPADMRMIEMLSNQIRVDQAILTGESCSVEKELESTRAINAVYQDKTNILFSGTVVVAGRARAIVVGVGANTAMGNIRDSILQTDDEATPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVVSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQLSEYSVSGTTYAPDGIIFDSSGVQLEFPAQLPCILHMAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFTSMPSALNMLSKHERASYCNHHWESQFKKISVLEFSRDRKMMSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTSVLTASIRTELEARFQSFAGNEMLRCLAIAFKLIPASQQSLSFGDEQDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLTDHSFTASEFEELPAMQQTIALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFIYSDSGPKLTYNELMNFDTCSTRETTYPCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIFLTMILHMLIMYVRPLAVLFSVTPLSWAEWTLVLYLSFPVIIIDEILKFFSRRSSGRIRLPFRFRRHDLLPKKELRDK | 960 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 4460229 | 4490954 | - | MC08g0551 | Mch8g0622 | 694243 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch8g0622 | 960 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 5 | 936 | IPR023298 | - | |
| Mch8g0622 | 960 | SFLD | C1.7: P-type atpase like | 284 | 701 | - | - | |
| Mch8g0622 | 960 | SUPERFAMILY | Calcium ATPase, transduction domain A | 82 | 193 | IPR008250 | - | |
| Mch8g0622 | 960 | Gene3D | - | 13 | 934 | - | - | |
| Mch8g0622 | 960 | FunFam | Calcium-transporting ATPase, putative | 167 | 299 | - | - | |
| Mch8g0622 | 960 | Gene3D | - | 4 | 195 | - | - | |
| Mch8g0622 | 960 | NCBIfam | calcium-translocating P-type ATPase, SERCA-type | 11 | 803 | IPR005782 | GO:0005388(InterPro)|GO:0006816(InterPro)|GO:0016020(InterPro) | |
| Mch8g0622 | 960 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 310 | 547 | IPR023299 | GO:0000166(InterPro) | |
| Mch8g0622 | 960 | Pfam | haloacid dehalogenase-like hydrolase | 540 | 663 | - | - | |
| Mch8g0622 | 960 | Pfam | Cation transporter/ATPase, N-terminus | 5 | 30 | IPR004014 | - | |
| Mch8g0622 | 960 | PRINTS | H+-transporting ATPase (proton pump) signature | 621 | 637 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g0622 | 960 | PRINTS | H+-transporting ATPase (proton pump) signature | 649 | 665 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g0622 | 960 | PRINTS | H+-transporting ATPase (proton pump) signature | 680 | 705 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g0622 | 960 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 5 | 936 | - | GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER) | |
| Mch8g0622 | 960 | Gene3D | - | 313 | 550 | IPR023299 | GO:0000166(InterPro) | |
| Mch8g0622 | 960 | FunFam | Calcium-transporting ATPase | 70 | 195 | - | - | |
| Mch8g0622 | 960 | FunFam | Sodium/potassium-transporting ATPase subunit alpha | 542 | 688 | - | - | |
| Mch8g0622 | 960 | SFLD | p-type atpase | 284 | 701 | IPR044492 | - | |
| Mch8g0622 | 960 | Pfam | Cation transporting ATPase, C-terminus | 733 | 932 | IPR006068 | - | |
| Mch8g0622 | 960 | Pfam | Cation transport ATPase (P-type) | 373 | 482 | - | - | |
| Mch8g0622 | 960 | FunFam | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 645 | 937 | - | - | |
| Mch8g0622 | 960 | PRINTS | P-type cation-transporting ATPase superfamily signature | 543 | 554 | - | - | |
| Mch8g0622 | 960 | PRINTS | P-type cation-transporting ATPase superfamily signature | 672 | 684 | - | - | |
| Mch8g0622 | 960 | PRINTS | P-type cation-transporting ATPase superfamily signature | 131 | 145 | - | - | |
| Mch8g0622 | 960 | PRINTS | P-type cation-transporting ATPase superfamily signature | 565 | 575 | - | - | |
| Mch8g0622 | 960 | PRINTS | P-type cation-transporting ATPase superfamily signature | 649 | 668 | - | - | |
| Mch8g0622 | 960 | PRINTS | P-type cation-transporting ATPase superfamily signature | 303 | 317 | - | - | |
| Mch8g0622 | 960 | Pfam | E1-E2 ATPase | 80 | 282 | - | - | |
| Mch8g0622 | 960 | CDD | P-type_ATPase_SERCA | 4 | 934 | - | - | |
| Mch8g0622 | 960 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 305 | 311 | IPR018303 | - | |
| Mch8g0622 | 960 | NCBIfam | HAD-IC family P-type ATPase | 50 | 325 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g0622 | 960 | NCBIfam | HAD-IC family P-type ATPase | 619 | 737 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g0622 | 960 | SUPERFAMILY | HAD-like | 536 | 697 | IPR036412 | - | |
| Mch8g0622 | 960 | Coils | Coil | 69 | 89 | - | - | |
| Mch8g0622 | 960 | Gene3D | - | 300 | 693 | IPR023214 | - | |
| Mch8g0622 | 960 | FunFam | Calcium-transporting ATPase | 313 | 550 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch3g0360 | Mch-Chr3:5900585 | Mch8g0622 | Mch-Chr8:4460229 | 4.36E-266 | dispersed | |
| Mch8g0622 | Mch-Chr8:4460229 | Mch8g2603 | Mch-Chr8:29182114 | 8.34E-88 | dispersed | |
| Mch8g0622 | Mch-Chr8:4460229 | Mch9g0907 | Mch-Chr9:7172631 | 3.38E-86 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch8g0622 | K05853 | - | csv:101211345 | 1779.99 |