Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch8g0636 | ATGGAGTCTTTGGGAGCTGTGTCTGATGGGGAATGGGATTCCTTCACCGCCATGTTCTCCTGCCAAGAGCTGGAGCAGCCCCCCCTTCCCATGGCGGAACATCAATATGATAATTACAATAATGCCGCCGCCGCTTACAGTAACAGCAGCTCATGGTTTTATTCCTTGGACGCTTTTGATCCCAATTTTCAGACCGACATGAGCTTGAGCTTGAGCTGTAGCAGCTGCAGTACTGATAATTCTAGTGGCAATGCCAGCTTTTTGTTTCCCAATTCTTTGACGACCCACGACTTGTTTATGTCGATTGACGATGACACCAATTTTGGGTCCTCATTTTTGTCGGATGTGTTAATGGGGGAACTCAAAGTGGATAAGGCTGATCTCGCCGCCGCCTGCGACGGATTATTGCAGATTCCGCCGCCTCCCGAAAATGAACCAATTGCATTGAAAAGGAAAGTCAATAGCGGAGACTTCTCCAATGATCAGAAGGTCACCAAGAAAACTCGGATTTCAGGACATGGGCAAAAGAGGAAGAAAACCCACAAGGCAAAAGGCGTGAGCGTTGAGGAAGAGGACAATGCAGCAGCGGCAGAAGCTGAAGGGCAGAGCTCGGTTAGTTACAGTTCAGAGGAAGAAAATGGTTCCCAGGGTGGCGGCGGCGCCACCACCTCCGACGGCGGCGTGAGCGGAAAAACCACCAGAGCCAGCAGAGGGTCGGCCACGGATCCCCAGAGCCTCTACGCCAGAAAACGAAGAGAGAGAATCAATGAGCGATTGAAAATCTTGCAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCTGTTCACTATGTTAAGTTTTTGCAGCTTCAAATCAAGTTATTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATGGACCTTGGTCTCCACCAGAAGCTCTCTCCATTTCTTTCACAT | 975 | 48.92 | MESLGAVSDGEWDSFTAMFSCQELEQPPLPMAEHQYDNYNNAAAAYSNSSSWFYSLDAFDPNFQTDMSLSLSCSSCSTDNSSGNASFLFPNSLTTHDLFMSIDDDTNFGSSFLSDVLMGELKVDKADLAAACDGLLQIPPPPENEPIALKRKVNSGDFSNDQKVTKKTRISGHGQKRKKTHKAKGVSVEEEDNAAAAEAEGQSSVSYSSEEENGSQGGGGATTSDGGVSGKTTRASRGSATDPQSLYARKRRERINERLKILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGMDLGLHQKLSPFLSH | 325 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 4576611 | 4578398 | - | MC08g0564 | Mch8g0636 | 694257 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch8g0636 | 325 | FunFam | Basic helix-loop-helix transcription factor | 240 | 297 | - | - | |
| Mch8g0636 | 325 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 61 | 311 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
| Mch8g0636 | 325 | CDD | bHLH_AtIND_like | 240 | 302 | - | - | |
| Mch8g0636 | 325 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 239 | 301 | IPR036638 | GO:0046983(InterPro) | |
| Mch8g0636 | 325 | MobiDBLite | consensus disorder prediction | 153 | 251 | - | - | |
| Mch8g0636 | 325 | MobiDBLite | consensus disorder prediction | 199 | 243 | - | - | |
| Mch8g0636 | 325 | Pfam | Helix-loop-helix DNA-binding domain | 249 | 289 | IPR011598 | GO:0046983(InterPro) | |
| Mch8g0636 | 325 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 239 | 288 | IPR011598 | GO:0046983(InterPro) | |
| Mch8g0636 | 325 | SMART | finulus | 245 | 294 | IPR011598 | GO:0046983(InterPro) | |
| Mch8g0636 | 325 | Gene3D | - | 241 | 297 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g0213 | Mch-Chr4:1396936 | Mch8g0636 | Mch-Chr8:4576611 | 3.73E-09 | dispersed | |
| Mch4g0781 | Mch-Chr4:5370536 | Mch8g0636 | Mch-Chr8:4576611 | 3.37E-41 | dispersed | |
| Mch8g0636 | Mch-Chr8:4576611 | Mch8g2990 | Mch-Chr8:32541002 | 5.57E-16 | dispersed | |
| Mch4g1691 | Mch-Chr4:20075627 | Mch8g0636 | Mch-Chr8:4576611 | 1.15E-21 | transposed | |
| Mch10g0448 | Mch-Chr10:2938142 | Mch8g0636 | Mch-Chr8:4576611 | 5.94E-25 | wgd | |
| Mch11g0358 | Mch-Chr11:2200117 | Mch8g0636 | Mch-Chr8:4576611 | 9.06E-50 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43803 | PF00010 | HLH | 3.50E-09 | No_clan | Mch | TF |
Pathway information