Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0670 ATGGGATTAAGCATGAAGGTGCATCAGTTTGCACGTGGGTTTTGGGAGGCGCACGAACCGTCCCTCACGCTTGGCTGCAAGCGCTTACGCCCCCTCGCACCCAAGCTTCAACAACCGCCCACCTCAGATCTCACAACTGCTGCCACCACTACAACGACGCTCACCACTTTCGACCTCAAGACCTTCATCAGGCCCGATTGTGGCCCCAGAAAACTTGGTTCTTCCTCTGACCACAACAAAGATTCTTCTTCATCTTCTTCCCCCCAGGTGGAGACGCACCCCGGGGGTACGAGGTGGAATCCCACGCAAGAACAGATTGGGATACTGGAGACGCTTTATAGGAGAGGAATGAGGACTCCCAATGCGCAGCAGATCGAGCACATCACCGCCCAGCTCGGCAACTACGGCAAGATCGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAAGCAAGAGAGCGTCAGAAACAGAAGCGCAACAGTCTCGGTCTCACTCACACCCCCCGAACACCCTCCAACCCAATCCCCTTCCACTCTCAGGAAGAGGAAGATAGTCCGTACAAGAGGAAGTGCAGGAGCTGGGGGTTTGAGTGTTTGGTAGAAGATAGTGGTATATTGTGTAAAAAGGAGGAAGGAGATAGGACTCTGGAGTTATTCCCGTTGCACCCAGAAGGCAGATCATGA 687 52.98 MGLSMKVHQFARGFWEAHEPSLTLGCKRLRPLAPKLQQPPTSDLTTAATTTTTLTTFDLKTFIRPDCGPRKLGSSSDHNKDSSSSSSPQVETHPGGTRWNPTQEQIGILETLYRRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLTHTPRTPSNPIPFHSQEEEDSPYKRKCRSWGFECLVEDSGILCKKEEGDRTLELFPLHPEGRS 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4770080 4772019 + MC08g_new0084 Mch8g0670 694291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0670 228 SUPERFAMILY Homeodomain-like 89 162 IPR009057 -
Mch8g0670 228 Gene3D - 96 163 - -
Mch8g0670 228 SMART HOX_1 94 161 IPR001356 GO:0003677(InterPro)
Mch8g0670 228 Pfam Homeodomain 97 156 IPR001356 GO:0003677(InterPro)
Mch8g0670 228 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 227 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Mch8g0670 228 MobiDBLite consensus disorder prediction 154 185 - -
Mch8g0670 228 MobiDBLite consensus disorder prediction 78 105 - -
Mch8g0670 228 MobiDBLite consensus disorder prediction 68 105 - -
Mch8g0670 228 FunFam WUSCHEL-related homeobox 4 96 163 - -
Mch8g0670 228 ProSiteProfiles 'Homeobox' domain profile. 92 157 IPR001356 GO:0003677(InterPro)
Mch8g0670 228 CDD homeodomain 97 158 IPR001356 GO:0003677(InterPro)
Mch8g0670 228 MobiDBLite consensus disorder prediction 162 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0670 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1589 Mch-Chr3:17845189 Mch8g0670 Mch-Chr8:4770080 6.77E-28 dispersed
Mch4g2519 Mch-Chr4:25869570 Mch8g0670 Mch-Chr8:4770080 1.96E-22 dispersed
Mch8g0670 Mch-Chr8:4770080 Mch6g0422 Mch-Chr6:2799458 5.60E-32 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch3g1589 . 3 192 Wox Gene Family AT3G18010 54.9 4.5e-46 182.2
Mch8g0670 . 5 163 Wox Gene Family AT1G46480 65.5 8.6e-52 200.3
Mch3g1589 . 3 192 Wox Gene Family AT3G18010 54.9 4.5e-46 182.2
Mch8g0670 . 5 163 Wox Gene Family AT1G46480 65.5 8.6e-52 200.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43807 PF00046 Homeodomain 5.00E-19 CL0123 Mch TF