Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0670 ATGGGATTAAGCATGAAGGTGCATCAGTTTGCACGTGGGTTTTGGGAGGCGCACGAACCGTCCCTCACGCTTGGCTGCAAGCGCTTACGCCCCCTCGCACCCAAGCTTCAACAACCGCCCACCTCAGATCTCACAACTGCTGCCACCACTACAACGACGCTCACCACTTTCGACCTCAAGACCTTCATCAGGCCCGATTGTGGCCCCAGAAAACTTGGTTCTTCCTCTGACCACAACAAAGATTCTTCTTCATCTTCTTCCCCCCAGGTGGAGACGCACCCCGGGGGTACGAGGTGGAATCCCACGCAAGAACAGATTGGGATACTGGAGACGCTTTATAGGAGAGGAATGAGGACTCCCAATGCGCAGCAGATCGAGCACATCACCGCCCAGCTCGGCAACTACGGCAAGATCGAAGGCAAGAATGTGTTTTATTGGTTTCAGAACCACAAAGCAAGAGAGCGTCAGAAACAGAAGCGCAACAGTCTCGGTCTCACTCACACCCCCCGAACACCCTCCAACCCAATCCCCTTCCACTCTCAGGAAGAGGAAGATAGTCCGTACAAGAGGAAGTGCAGGAGCTGGGGGTTTGAGTGTTTGGTAGAAGATAGTGGTATATTGTGTAAAAAGGAGGAAGGAGATAGGACTCTGGAGTTATTCCCGTTGCACCCAGAAGGCAGATCATGA 687 52.98 MGLSMKVHQFARGFWEAHEPSLTLGCKRLRPLAPKLQQPPTSDLTTAATTTTTLTTFDLKTFIRPDCGPRKLGSSSDHNKDSSSSSSPQVETHPGGTRWNPTQEQIGILETLYRRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLTHTPRTPSNPIPFHSQEEEDSPYKRKCRSWGFECLVEDSGILCKKEEGDRTLELFPLHPEGRS 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4770080 4772019 + MC08g_new0084 Mch8g0670 694291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0670 228 SUPERFAMILY Homeodomain-like 89 162 IPR009057 -
Mch8g0670 228 Gene3D - 96 163 - -
Mch8g0670 228 SMART HOX_1 94 161 IPR001356 GO:0003677(InterPro)
Mch8g0670 228 Pfam Homeodomain 97 156 IPR001356 GO:0003677(InterPro)
Mch8g0670 228 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 227 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Mch8g0670 228 MobiDBLite consensus disorder prediction 154 185 - -
Mch8g0670 228 MobiDBLite consensus disorder prediction 78 105 - -
Mch8g0670 228 MobiDBLite consensus disorder prediction 68 105 - -
Mch8g0670 228 FunFam WUSCHEL-related homeobox 4 96 163 - -
Mch8g0670 228 ProSiteProfiles 'Homeobox' domain profile. 92 157 IPR001356 GO:0003677(InterPro)
Mch8g0670 228 CDD homeodomain 97 158 IPR001356 GO:0003677(InterPro)
Mch8g0670 228 MobiDBLite consensus disorder prediction 162 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1589 Mch-Chr3:17845189 Mch8g0670 Mch-Chr8:4770080 6.77E-28 dispersed
Mch4g2519 Mch-Chr4:25869570 Mch8g0670 Mch-Chr8:4770080 1.96E-22 dispersed
Mch8g0670 Mch-Chr8:4770080 Mch6g0422 Mch-Chr6:2799458 5.60E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43807 PF00046 Homeodomain 5.00E-19 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0670 - - - 0.0