Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0679 GATGTTGACCATTTAAAGTCGGGGGATCCGCAGATGGATATTCTGACCATGATTCAGCAGATGGGAAAATTTCCGGAGTTGTTAGAATTTACTGAACTCTCACCCTCGGCTTTTGGGAGTTCCAATGCCGCTACTTCACTGCTCTTGGAAAACCCAAATCCCAATTTCTCTTCATTTAATCTGCCATCCACCGTTTCAATGAATAACCCCACTGACCCAGCTGGGCGACCACCGTGTTTTCTGCCATTTTCCGCCGCCGGCCGGTGGAGGAGTCAAATTGCCGCTGCCGGAAATTCCGACACAAAGCAGAATTCGATGGCGGCGATGAGGGAGATGATCTACAGAATGGCGGCGATGCAGCCGATCCACATAGACCCAGAATCCGTGAAGGCGCCGAAGCGGCGGAACGTGAAGATATCAAAAGATCCACAGAGCGTCGCGGCGCGGCACAGGAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAGAGAATAGTTCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAGGCCATCCACTACGTCAAGTTCTTGAAAAACCAGGTCCAGTCCCTCGAATTCGCCGCCGCCGCCTCCGCCGCCAACCGCCCCACCGCCGCCGGGAGCTACCTCTTCAATCATGCTAGTAATAAGCACTACCAAATTGCTCAAGATTATGGGCATGAGCACATGGAGGATGCT 711 52.6 DVDHLKSGDPQMDILTMIQQMGKFPELLEFTELSPSAFGSSNAATSLLLENPNPNFSSFNLPSTVSMNNPTDPAGRPPCFLPFSAAGRWRSQIAAAGNSDTKQNSMAAMREMIYRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLEFAAAASAANRPTAAGSYLFNHASNKHYQIAQDYGHEHMEDA 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4848301 4849284 + MC08g0591 Mch8g0679 694300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0679 237 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 44 215 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0679 237 FunFam BHLH transcription factor 142 206 - -
Mch8g0679 237 Gene3D - 138 206 IPR036638 GO:0046983(InterPro)
Mch8g0679 237 SMART finulus 145 194 IPR011598 GO:0046983(InterPro)
Mch8g0679 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983(InterPro)
Mch8g0679 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 197 IPR036638 GO:0046983(InterPro)
Mch8g0679 237 Pfam Helix-loop-helix DNA-binding domain 148 189 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0679 Mch-Chr8:4848301 Mch9g0278 Mch-Chr9:2081253 1.95E-34 dispersed
Mch9g0326 Mch-Chr9:2436986 Mch8g0679 Mch-Chr8:4848301 2.82E-06 dispersed
Mch8g0673 Mch-Chr8:4792215 Mch8g0679 Mch-Chr8:4848301 4.12E-08 proximal
Mch1g1019 Mch-Chr1:13226753 Mch8g0679 Mch-Chr8:4848301 6.02E-39 transposed
Mch1g2008 Mch-Chr1:19616144 Mch8g0679 Mch-Chr8:4848301 6.31E-06 transposed
Mch2g1357 Mch-Chr2:9653342 Mch8g0679 Mch-Chr8:4848301 1.39E-47 transposed
Mch11g0298 Mch-Chr11:1879945 Mch8g0679 Mch-Chr8:4848301 7.16E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43810 PF00010 HLH 1.80E-06 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0679 - - - 0.0