Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0679 | GATGTTGACCATTTAAAGTCGGGGGATCCGCAGATGGATATTCTGACCATGATTCAGCAGATGGGAAAATTTCCGGAGTTGTTAGAATTTACTGAACTCTCACCCTCGGCTTTTGGGAGTTCCAATGCCGCTACTTCACTGCTCTTGGAAAACCCAAATCCCAATTTCTCTTCATTTAATCTGCCATCCACCGTTTCAATGAATAACCCCACTGACCCAGCTGGGCGACCACCGTGTTTTCTGCCATTTTCCGCCGCCGGCCGGTGGAGGAGTCAAATTGCCGCTGCCGGAAATTCCGACACAAAGCAGAATTCGATGGCGGCGATGAGGGAGATGATCTACAGAATGGCGGCGATGCAGCCGATCCACATAGACCCAGAATCCGTGAAGGCGCCGAAGCGGCGGAACGTGAAGATATCAAAAGATCCACAGAGCGTCGCGGCGCGGCACAGGAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAGAGAATAGTTCCCGGCGGCACCAAAATGGACACCGCCTCCATGTTAGACGAGGCCATCCACTACGTCAAGTTCTTGAAAAACCAGGTCCAGTCCCTCGAATTCGCCGCCGCCGCCTCCGCCGCCAACCGCCCCACCGCCGCCGGGAGCTACCTCTTCAATCATGCTAGTAATAAGCACTACCAAATTGCTCAAGATTATGGGCATGAGCACATGGAGGATGCT | 711 | 52.6 | DVDHLKSGDPQMDILTMIQQMGKFPELLEFTELSPSAFGSSNAATSLLLENPNPNFSSFNLPSTVSMNNPTDPAGRPPCFLPFSAAGRWRSQIAAAGNSDTKQNSMAAMREMIYRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQSLEFAAAASAANRPTAAGSYLFNHASNKHYQIAQDYGHEHMEDA | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4848301 | 4849284 | + | MC08g0591 | Mch8g0679 | 694300 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0679 | 237 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 44 | 215 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch8g0679 | 237 | FunFam | BHLH transcription factor | 142 | 206 | - | - | |
Mch8g0679 | 237 | Gene3D | - | 138 | 206 | IPR036638 | GO:0046983(InterPro) | |
Mch8g0679 | 237 | SMART | finulus | 145 | 194 | IPR011598 | GO:0046983(InterPro) | |
Mch8g0679 | 237 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 139 | 188 | IPR011598 | GO:0046983(InterPro) | |
Mch8g0679 | 237 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 143 | 197 | IPR036638 | GO:0046983(InterPro) | |
Mch8g0679 | 237 | Pfam | Helix-loop-helix DNA-binding domain | 148 | 189 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch8g0679 | Mch-Chr8:4848301 | Mch9g0278 | Mch-Chr9:2081253 | 1.95E-34 | dispersed | |
Mch9g0326 | Mch-Chr9:2436986 | Mch8g0679 | Mch-Chr8:4848301 | 2.82E-06 | dispersed | |
Mch8g0673 | Mch-Chr8:4792215 | Mch8g0679 | Mch-Chr8:4848301 | 4.12E-08 | proximal | |
Mch1g1019 | Mch-Chr1:13226753 | Mch8g0679 | Mch-Chr8:4848301 | 6.02E-39 | transposed | |
Mch1g2008 | Mch-Chr1:19616144 | Mch8g0679 | Mch-Chr8:4848301 | 6.31E-06 | transposed | |
Mch2g1357 | Mch-Chr2:9653342 | Mch8g0679 | Mch-Chr8:4848301 | 1.39E-47 | transposed | |
Mch11g0298 | Mch-Chr11:1879945 | Mch8g0679 | Mch-Chr8:4848301 | 7.16E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43810 | PF00010 | HLH | 1.80E-06 | No_clan | Mch | TF |
Pathway information
