Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch8g0707 | ATGGGGGTGGCTAATCTCTCGTACGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGAGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAGGCTCTCCTCGATTCTTCCCCTTCCAAATCCTCCCCAAGCAAGTTGGGCAAGCCTCGTGTCACTCAGAAACAGCTGGTGGTGGTGAGGAGATCCAGTCGCGTAGCAAAACAATCAGCCCCTGTTTACGCTGAAGTTCTTATCAATCGCGTGGTGATTCCTAGAAGGACCTCCAGAGCTAGAGATTTTTCAAACCAGTTTTATGCTTCGGATGAAGCAAGAAAAAATGCCTTTGAAAGAGCAGAGCAACTTCAATCTGGGTTGGAGCCGAATTATCCCAGCTTTATAAAGTCAATGGTTCGATCTCATGTTAGTGGTTGTTTCTGGCTGGGGCTTCCTGCTCATGTCTGCAAGACAATCCTTCCAAATCGTGATGGAGTTATGACTTTAATAGATGAAGATGGCGATGAGTATCCAACAATATATTTGGCCCGAAAAACAGGACTTAGTGGCGGATGGAAGGGTTTTTCAATTGCTCATAAATTGGGAGATGGGGATGCTGTGGTTTTTCAGCTCATTAGACCTACAACCTGCAAGGTGATTGCACTTCATCTCTTTACTGGATTCACAATCCTT | 672 | 45.39 | MGVANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKLGKPRVTQKQLVVVRRSSRVAKQSAPVYAEVLINRVVIPRRTSRARDFSNQFYASDEARKNAFERAEQLQSGLEPNYPSFIKSMVRSHVSGCFWLGLPAHVCKTILPNRDGVMTLIDEDGDEYPTIYLARKTGLSGGWKGFSIAHKLGDGDAVVFQLIRPTTCKVIALHLFTGFTIL | 224 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 5029350 | 5030498 | - | MC08g0615 | Mch8g0707 | 694328 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch8g0707 | 224 | Gene3D | - | 101 | 219 | IPR015300 | - | |
| Mch8g0707 | 224 | Pfam | B3 DNA binding domain | 127 | 216 | IPR003340 | GO:0003677(InterPro) | |
| Mch8g0707 | 224 | Coils | Coil | 6 | 26 | - | - | |
| Mch8g0707 | 224 | CDD | B3_DNA | 125 | 210 | IPR003340 | GO:0003677(InterPro) | |
| Mch8g0707 | 224 | ProSiteProfiles | B3 DNA-binding domain profile. | 127 | 219 | IPR003340 | GO:0003677(InterPro) | |
| Mch8g0707 | 224 | SMART | B3_2 | 127 | 213 | IPR003340 | GO:0003677(InterPro) | |
| Mch8g0707 | 224 | SUPERFAMILY | DNA-binding pseudobarrel domain | 121 | 214 | IPR015300 | - | |
| Mch8g0707 | 224 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 12 | 212 | IPR044837 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch2g1364 | Mch-Chr2:9791644 | Mch8g0707 | Mch-Chr8:5029350 | 1.60E-30 | dispersed | |
| Mch4g0683 | Mch-Chr4:4561040 | Mch8g0707 | Mch-Chr8:5029350 | 5.13E-66 | dispersed | |
| Mch8g0706 | Mch-Chr8:5021858 | Mch8g0707 | Mch-Chr8:5029350 | 4.32E-130 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43813 | PF02362 | B3 | 3.00E-11 | CL0405 | Mch | TF |
Pathway information