Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0732 ATGGAATTGAAGGACATCATTCCGCCGGCACCGCCGCTGTTACTGCCGGACCTCTCGTTGCAGATTAGTCCGCCGTCGGATTCCGGCAGCGATCTGAGCCATGAGAATGCTGCTGCACGGCTTTTTACCAAAACCCATCTGGATTTAGGGCCCAATAGTGGCGCCGGCCGCCGTGATCTCCACCGTCAAAATCAAATCTTTGGGCGTGCCACCTTCAAGAGAGCTCCCAAAATGGCGTTTGGGGTTAGGAGAAATATTAGAGCTCCGAGAATGAGATGGACCACTACTCTCCATGCCCATTTCGTCCACGCCGTTCAGCTCCTCGGCGGCCATGAAAGGGCAACGCCAAAATCTGTGTTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAAAGCCATTTGCAGATGTATAGAACGGTGAAAAGCACTGACAAATCTACTGACTTTGCCTTGAAGAAGCAGAGGCAAGATCAGGTTGATGCTGTTGGTGTTTCAGATTGTGAGATTTCTAACCCAACTCTTACAATGTGGAAAAGCCCTGATCAAATGGACATGTTCTCTTCATCAATGGAGACAAATCATGAGATGACGACCAGAAGGAGTCAACATTACAACAATGGTAGCACTGGAAACAACAACCAGGAGCAGGAGGAGGACCGACACAAGGCAAGCATCAAAATCTCGAGTGGCGTGAAGAAGCAGAAATTGGAGGGTAGCTGCTTGTCGTTGAGTGACCATGGCCATGTGTATACTCATAATAATAATACTCTTAACTTAGAATTCACTCTCGGATATGCCCAAATTCTCTAA 819 47.86 MELKDIIPPAPPLLLPDLSLQISPPSDSGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQIFGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEISNPTLTMWKSPDQMDMFSSSMETNHEMTTRRSQHYNNGSTGNNNQEQEEDRHKASIKISSGVKKQKLEGSCLSLSDHGHVYTHNNNTLNLEFTLGYAQIL 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5187994 5190833 + MC08g0639 Mch8g0732 694353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0732 272 Pfam Myb-like DNA-binding domain 90 141 IPR001005 -
Mch8g0732 272 SUPERFAMILY Homeodomain-like 86 143 IPR009057 -
Mch8g0732 272 Gene3D - 88 145 - -
Mch8g0732 272 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 142 IPR006447 GO:0003677(InterPro)
Mch8g0732 272 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 15 269 IPR044847 GO:0000976(InterPro)|GO:0006355(InterPro)|GO:0010158(InterPro)
Mch8g0732 272 MobiDBLite consensus disorder prediction 194 232 - -
Mch8g0732 272 MobiDBLite consensus disorder prediction 194 216 - -
Mch8g0732 272 FunFam Myb family transcription factor 87 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0732 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1933 Mch-Chr1:19178333 Mch8g0732 Mch-Chr8:5187994 4.44E-20 dispersed
Mch6g2207 Mch-Chr6:24348847 Mch8g0732 Mch-Chr8:5187994 1.03E-32 dispersed
Mch8g0732 Mch-Chr8:5187994 Mch8g2224 Mch-Chr8:25341436 1.80E-30 dispersed
Mch11g0241 Mch-Chr11:1520458 Mch8g0732 Mch-Chr8:5187994 4.51E-45 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch8g0732 . 15 150 G2-like Transcription Factor Family AT5G42630 62.8 8.9e-40 160.6
Mch11g0241 . 10 152 G2-like Transcription Factor Family AT5G42630 55.2 9.2e-37 150.6
Mch8g3114 . 12 488 G2-like Transcription Factor Family AT2G03500 50.3 2.1e-90 329.7
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT1G25550 58.2 7.6e-57 217.6
Mch9g1987 . 19 253 G2-like Transcription Factor Family AT1G25550 53.8 6.2e-51 198.0
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT3G25790 50.6 2.3e-39 159.5
Mch3g0205 . 1 289 G2-like Transcription Factor Family AT3G46640 50.2 3.5e-61 232.3
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT5G05090 57.4 1.3e-74 276.6
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT5G05090 54.6 9.5e-73 270.4
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT4G13640 56.2 2.9e-62 235.7
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch5g1160 . 35 267 G2-like Transcription Factor Family AT1G69580 50.8 2.2e-42 169.9
Mch4g0013 . 1 360 G2-like Transcription Factor Family AT1G79430 51.8 1.3e-72 270.4
Mch5g0198 . 31 209 G2-like Transcription Factor Family AT1G79430 56.8 1.1e-39 161.0
Mch1g1664 . 82 325 G2-like Transcription Factor Family AT2G01060 55.2 6.5e-57 217.6
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT3G10760 63.2 4.7e-93 338.2
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT3G10760 58.3 8.8e-84 307.4
Mch5g1325 . 1 193 G2-like Transcription Factor Family AT2G40970 61.6 3.2e-62 235.3
Mch1g0471 . 1 202 G2-like Transcription Factor Family AT2G40970 61.0 3.0e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012530 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43817 PF00249 Myb_DNA-binding 1.10E-05 CL0123 Mch TF