Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0744 ATGGCGAGCGGGTTTGGGGAATCGACGAGCAGGCAACCCCAAAGCCCATCGTGTTCAGACAACAATAGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATCGTAACTCTATGCGGTCATCTTTTCTGTTGGCCGTGCCTTTATAAATGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCCATCATAGAAGAGCAAAAGTTGGTTCCCTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCAAAAAGTATTCCTGGAATTAACATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCATTTCCCTCACAATGGGTTTGGATTCATGGGAGGTCTCGGAGGGTTTGCTCCCATGGCGTCTACAAGGTTTGGTAATTTCACCTTGTCTGCGGCATTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTGGCTTTCCATATGGGTTCCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGCTTATGTTGATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAA 690 47.1 MASGFGESTSRQPQSPSCSDNNSDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNHFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAGFPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLMLIGFCVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5264089 5264778 - MC08g0650 Mch8g0744 694365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0744 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 219 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Mch8g0744 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Mch8g0744 230 SUPERFAMILY RING/U-box 26 83 - -
Mch8g0744 230 CDD RING-HC_AtRMA-like 28 72 - -
Mch8g0744 230 MobiDBLite consensus disorder prediction 1 20 - -
Mch8g0744 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 70 IPR018957 GO:0046872(InterPro)
Mch8g0744 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Mch8g0744 230 SMART ring_2 30 70 IPR001841 -
Mch8g0744 230 MobiDBLite consensus disorder prediction 84 121 - -
Mch8g0744 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 96 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1077 Mch-Chr11:7502908 Mch8g0744 Mch-Chr8:5264089 1.62E-29 dispersed
Mch1g1866 Mch-Chr1:18718494 Mch8g0744 Mch-Chr8:5264089 3.42E-30 dispersed
Mch2g0556 Mch-Chr2:3921863 Mch8g0744 Mch-Chr8:5264089 8.57E-31 dispersed
Mch4g0159 Mch-Chr4:1086297 Mch8g0744 Mch-Chr8:5264089 6.41E-31 dispersed
Mch5g1449 Mch-Chr5:15565304 Mch8g0744 Mch-Chr8:5264089 2.55E-30 transposed
Mch8g0969 Mch-Chr8:6896464 Mch8g0744 Mch-Chr8:5264089 1.37E-24 transposed
Mch1g1147 Mch-Chr1:13970955 Mch8g0744 Mch-Chr8:5264089 5.70E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0744 K10666 - csv:101221027 463.766