Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0744 ATGGCGAGCGGGTTTGGGGAATCGACGAGCAGGCAACCCCAAAGCCCATCGTGTTCAGACAACAATAGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATCGTAACTCTATGCGGTCATCTTTTCTGTTGGCCGTGCCTTTATAAATGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCCATCATAGAAGAGCAAAAGTTGGTTCCCTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCAAAAAGTATTCCTGGAATTAACATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCATTTCCCTCACAATGGGTTTGGATTCATGGGAGGTCTCGGAGGGTTTGCTCCCATGGCGTCTACAAGGTTTGGTAATTTCACCTTGTCTGCGGCATTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTGGCTTTCCATATGGGTTCCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGCTTATGTTGATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAA 690 47.1 MASGFGESTSRQPQSPSCSDNNSDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNHFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAGFPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLMLIGFCVLLALIWQ 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5264089 5264778 - MC08g0650 Mch8g0744 694365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0744 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 219 IPR045103 GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Mch8g0744 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Mch8g0744 230 SUPERFAMILY RING/U-box 26 83 - -
Mch8g0744 230 CDD RING-HC_AtRMA-like 28 72 - -
Mch8g0744 230 MobiDBLite consensus disorder prediction 1 20 - -
Mch8g0744 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 70 IPR018957 GO:0046872(InterPro)
Mch8g0744 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Mch8g0744 230 SMART ring_2 30 70 IPR001841 -
Mch8g0744 230 MobiDBLite consensus disorder prediction 84 121 - -
Mch8g0744 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 96 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0744 K10666 - - csv:101221027 463.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1077 Mch-Chr11:7502908 Mch8g0744 Mch-Chr8:5264089 1.62E-29 dispersed
Mch1g1866 Mch-Chr1:18718494 Mch8g0744 Mch-Chr8:5264089 3.42E-30 dispersed
Mch2g0556 Mch-Chr2:3921863 Mch8g0744 Mch-Chr8:5264089 8.57E-31 dispersed
Mch4g0159 Mch-Chr4:1086297 Mch8g0744 Mch-Chr8:5264089 6.41E-31 dispersed
Mch5g1449 Mch-Chr5:15565304 Mch8g0744 Mch-Chr8:5264089 2.55E-30 transposed
Mch8g0969 Mch-Chr8:6896464 Mch8g0744 Mch-Chr8:5264089 1.37E-24 transposed
Mch1g1147 Mch-Chr1:13970955 Mch8g0744 Mch-Chr8:5264089 5.70E-99 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2501 . 81 567 C3H Transcription Factor Family AT2G31510 77.9 8.0e-235 809.7
Mch7g0178 . 143 654 C3H Transcription Factor Family AT2G31510 72.9 3.7e-224 774.2
Mch8g2501 . 50 541 C3H Transcription Factor Family AT2G31770 56.9 1.5e-170 596.3
Mch7g0178 . 126 613 C3H Transcription Factor Family AT2G31770 56.7 6.7e-166 580.9
Mch8g2501 . 64 526 C3H Transcription Factor Family AT2G31760 59.1 1.9e-170 595.9
Mch7g0178 . 126 613 C3H Transcription Factor Family AT2G31760 56.1 1.4e-165 579.7
Mch1g0982 . 7 169 C3H Transcription Factor Family AT5G06490 51.9 9.6e-46 180.3
Mch1g0982 . 7 169 C3H Transcription Factor Family AT5G06490 51.9 9.6e-46 180.3
Mch4g2385 . 1 223 C3H Transcription Factor Family AT3G02290 60.6 1.1e-72 270.0
Mch6g0759 . 1 304 C3H Transcription Factor Family AT1G11020 75.4 5.8e-133 470.7
Mch8g1314 . 59 218 C3H Transcription Factor Family AT1G50440 73.8 6.8e-67 250.8
Mch1g0085 . 8 369 C3H Transcription Factor Family AT5G08750 61.8 8.5e-125 443.7
Mch11g1644 . 31 186 C3H Transcription Factor Family AT1G22510 69.9 7.0e-60 227.3
Mch4g2385 . 1 223 C3H Transcription Factor Family AT5G38895 54.5 1.2e-67 253.8
Mch8g0744 . 16 227 C3H Transcription Factor Family AT1G19310 67.9 1.2e-81 299.7
Mch1g1147 . 16 225 C3H Transcription Factor Family AT1G19310 59.4 2.1e-68 255.8
Mch11g1644 . 35 186 C3H Transcription Factor Family AT1G72175 70.4 3.2e-57 218.0
Mch6g2258 . 1 203 C3H Transcription Factor Family AT5G48655 50.5 4.1e-44 174.9
Mch1g1451 . 7 323 C3H Transcription Factor Family AT2G22120 81.2 2.5e-156 548.5
Mch8g0168 . 27 156 C3H Transcription Factor Family AT5G07040 59.2 8.3e-40 160.2
Mch6g0359 . 1 389 C3H Transcription Factor Family AT1G18470 76.1 3.1e-179 624.8
Mch4g1241 . 11 389 C3H Transcription Factor Family AT1G18470 64.9 9.6e-144 506.9
Mch4g1372 . 50 274 C3H Transcription Factor Family AT1G68200 51.9 4.9e-49 191.8
Mch8g2501 . 50 541 C3H Transcription Factor Family AT2G31770 56.9 1.5e-170 596.3
Mch7g0178 . 126 613 C3H Transcription Factor Family AT2G31770 56.7 6.7e-166 580.9
Mch8g2501 . 64 526 C3H Transcription Factor Family AT2G31760 59.1 1.9e-170 595.9
Mch7g0178 . 126 613 C3H Transcription Factor Family AT2G31760 56.1 1.4e-165 579.7
Mch11g1300 . 46 276 C3H Transcription Factor Family AT5G55970 73.7 4.9e-100 361.3
Mch11g1301 . 45 289 C3H Transcription Factor Family AT5G55970 63.1 3.5e-90 328.6
Mch1g0085 . 8 369 C3H Transcription Factor Family AT5G63780 56.8 3.5e-118 421.8
Mch5g1449 . 1 421 C3H Transcription Factor Family AT3G58030 52.9 3.1e-105 379.0
Mch11g1300 . 35 345 C3H Transcription Factor Family AT4G26580 65.9 4.6e-117 417.9
Mch11g1301 . 38 335 C3H Transcription Factor Family AT4G26580 60.7 7.9e-109 390.6
Mch11g1733 . 22 155 C3H Transcription Factor Family AT4G10150 55.4 8.5e-41 164.1
Mch1g0595 . 11 477 C3H Transcription Factor Family AT5G01960 70.4 1.1e-171 599.7
Mch9g1370 . 1 495 C3H Transcription Factor Family AT5G01960 57.8 4.5e-149 524.6
Mch2g0458 . 1 152 C3H Transcription Factor Family AT2G04240 58.0 7.4e-44 173.7
Mch4g0358 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 2.5e-39 158.7
Mch2g0178 . 15 244 C3H Transcription Factor Family AT5G19430 56.4 4.1e-65 245.0
Mch10g0936 . 73 512 C3H Transcription Factor Family AT5G45290 50.7 2.1e-95 346.7
Mch2g0178 . 40 244 C3H Transcription Factor Family AT5G12310 58.4 3.7e-58 221.9
Mch6g0468 . 22 338 C3H Transcription Factor Family AT5G05810 52.4 6.3e-76 281.6
Mch4g2531 . 22 202 C3H Transcription Factor Family AT5G05830 59.4 1.9e-57 219.2
Mch5g1893 . 70 231 C3H Transcription Factor Family AT5G05830 61.1 1.5e-54 209.5
Mch1g0649 . 1 131 C3H Transcription Factor Family AT5G05830 65.4 2.9e-45 178.7
Mch4g2385 . 1 223 C3H Transcription Factor Family AT5G15790 57.6 3.5e-71 265.0
Mch4g2561 . 1 272 C3H Transcription Factor Family AT3G55530 78.8 4.3e-113 404.4
Mch9g0837 . 1 273 C3H Transcription Factor Family AT1G63900 76.6 3.5e-118 421.4
Mch5g0259 . 17 401 C3H Transcription Factor Family AT2G44580 56.2 1.4e-125 446.4
Mch8g0744 . 20 150 C3H Transcription Factor Family AT1G74990 57.6 6.5e-41 163.7
Mch11g0470 . 3 313 C3H Transcription Factor Family AT5G20910 65.0 2.4e-112 402.1
Mch1g1147 . 25 227 C3H Transcription Factor Family AT2G23780 63.7 2.5e-74 275.4
Mch8g0744 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 1.1e-69 260.0
Mch5g1298 . 1 313 C3H Transcription Factor Family AT3G10810 54.9 3.2e-82 302.8
Mch1g0480 . 102 483 C3H Transcription Factor Family AT3G10810 51.9 2.3e-72 270.0
Mch6g2410 . 1 166 C3H Transcription Factor Family AT1G63840 55.2 1.8e-45 179.1
Mch7g0647 . 1 149 C3H Transcription Factor Family AT1G63840 55.8 1.5e-44 176.0
Mch4g1448 . 13 340 C3H Transcription Factor Family AT1G68070 64.8 1.7e-114 409.5
Mch8g0405 . 1 407 C3H Transcription Factor Family AT1G80400 53.3 2.2e-113 406.0
Mch8g2501 . 81 567 C3H Transcription Factor Family AT2G31510 77.9 8.0e-235 809.7
Mch7g0178 . 143 654 C3H Transcription Factor Family AT2G31510 72.9 3.7e-224 774.2
Mch1g0982 . 10 168 C3H Transcription Factor Family AT2G35910 63.4 2.9e-51 198.7
Mch5g1527 . 6 161 C3H Transcription Factor Family AT2G35910 51.9 4.0e-45 178.3
Mch1g0314 . 1 316 C3H Transcription Factor Family AT2G41980 77.5 7.4e-146 513.5
Mch10g0060 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 1.4e-128 456.1
Mch10g0061 . 61 318 C3H Transcription Factor Family AT2G41980 80.2 6.9e-128 453.8
Mch2g0077 . 26 323 C3H Transcription Factor Family AT2G41980 71.0 9.1e-128 453.4
Mch9g1742 . 48 306 C3H Transcription Factor Family AT2G41980 78.8 5.0e-126 447.6
Mch4g1590 . 48 306 C3H Transcription Factor Family AT2G41980 78.8 8.5e-126 446.8
Mch5g0635 . 100 374 C3H Transcription Factor Family AT3G06140 62.7 2.0e-94 342.8
Mch5g1754 . 36 333 C3H Transcription Factor Family AT3G09770 57.0 4.9e-82 301.6
Mch8g1347 . 148 690 C3H Transcription Factor Family AT3G26730 55.2 3.3e-160 562.4
Mch6g0156 . 58 352 C3H Transcription Factor Family AT3G47990 71.1 9.3e-125 443.4
Mch3g1454 . 296 569 C3H Transcription Factor Family AT3G47990 69.6 1.9e-114 409.1
Mch6g2186 . 7 188 C3H Transcription Factor Family AT5G17600 56.1 5.6e-52 201.8
Mch2g1145 . 34 401 C3H Transcription Factor Family AT3G18930 54.2 1.3e-84 310.5
Mch10g1791 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 3.8e-75 278.1
Mch5g1804 . 5 271 C3H Transcription Factor Family AT5G02750 54.4 1.0e-69 260.4
Mch6g0359 . 5 468 C3H Transcription Factor Family AT1G73950 72.2 3.1e-198 688.0
Mch4g1241 . 12 467 C3H Transcription Factor Family AT1G73950 59.9 6.8e-161 563.9
Mch11g1733 . 25 166 C3H Transcription Factor Family AT1G33480 59.2 3.5e-43 172.2
Mch4g1448 . 2 241 C3H Transcription Factor Family AT2G01735 57.7 2.7e-69 258.8
Mch10g1468 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 8.8e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001146 5 2 2 4 3 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 2 2 79