Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0744 | ATGGCGAGCGGGTTTGGGGAATCGACGAGCAGGCAACCCCAAAGCCCATCGTGTTCAGACAACAATAGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATCGTAACTCTATGCGGTCATCTTTTCTGTTGGCCGTGCCTTTATAAATGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCCATCATAGAAGAGCAAAAGTTGGTTCCCTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCAAAAAGTATTCCTGGAATTAACATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCATTTCCCTCACAATGGGTTTGGATTCATGGGAGGTCTCGGAGGGTTTGCTCCCATGGCGTCTACAAGGTTTGGTAATTTCACCTTGTCTGCGGCATTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTGGCTTTCCATATGGGTTCCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGATACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGCTTATGTTGATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAA | 690 | 47.1 | MASGFGESTSRQPQSPSCSDNNSDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNHFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAGFPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLMLIGFCVLLALIWQ | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5264089 | 5264778 | - | MC08g0650 | Mch8g0744 | 694365 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0744 | 230 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 9 | 219 | IPR045103 | GO:0005783(InterPro)|GO:0006511(InterPro)|GO:0006511(PANTHER)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER) | |
Mch8g0744 | 230 | ProSitePatterns | Zinc finger RING-type signature. | 45 | 54 | IPR017907 | - | |
Mch8g0744 | 230 | SUPERFAMILY | RING/U-box | 26 | 83 | - | - | |
Mch8g0744 | 230 | CDD | RING-HC_AtRMA-like | 28 | 72 | - | - | |
Mch8g0744 | 230 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Mch8g0744 | 230 | Pfam | Zinc finger, C3HC4 type (RING finger) | 30 | 70 | IPR018957 | GO:0046872(InterPro) | |
Mch8g0744 | 230 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 71 | IPR001841 | - | |
Mch8g0744 | 230 | SMART | ring_2 | 30 | 70 | IPR001841 | - | |
Mch8g0744 | 230 | MobiDBLite | consensus disorder prediction | 84 | 121 | - | - | |
Mch8g0744 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 96 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g1077 | Mch-Chr11:7502908 | Mch8g0744 | Mch-Chr8:5264089 | 1.62E-29 | dispersed | |
Mch1g1866 | Mch-Chr1:18718494 | Mch8g0744 | Mch-Chr8:5264089 | 3.42E-30 | dispersed | |
Mch2g0556 | Mch-Chr2:3921863 | Mch8g0744 | Mch-Chr8:5264089 | 8.57E-31 | dispersed | |
Mch4g0159 | Mch-Chr4:1086297 | Mch8g0744 | Mch-Chr8:5264089 | 6.41E-31 | dispersed | |
Mch5g1449 | Mch-Chr5:15565304 | Mch8g0744 | Mch-Chr8:5264089 | 2.55E-30 | transposed | |
Mch8g0969 | Mch-Chr8:6896464 | Mch8g0744 | Mch-Chr8:5264089 | 1.37E-24 | transposed | |
Mch1g1147 | Mch-Chr1:13970955 | Mch8g0744 | Mch-Chr8:5264089 | 5.70E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch8g0744 | K10666 | - | csv:101221027 | 463.766 |