Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0756 ATGGTAGCGGCAGAGAACAATTCTTCACCGGCGGCGCTTTCCACTCCTTCCGGGGACGAAGCTGCGGTATCTTCATCGCCGGGAGTTCAAATCGAGATCGTCGGCGCCGTGGCTCCGCCGAAGAAGAAGAGGAATCTTCCCGGCATGCCAGATCCGGACGCGGAGGTGATCGCTCTATCGCCGAAATCGCTTCTGGCGACGAACCGCTTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAATCTGCAGCTCCACCGGCGCGGCCACAACTTGCCTTGGAAGCTCCGCCAGCGGACGAGCCAAGAGATTCGGAAACGAGTGTACGTTTGTCCGGAGGCGTCTTGCGTTCACCACAATCCGGCGAGGGCGCTGGGCGATCTAACCGGCATCAAAAAGCACTTCTCGAGGAAGCACGGCGAGAAGAAGTGGAAGTGCGAGCGGTGCTCCAAGAAGTACGCCGTGCAATCGGATTGGAAGGCGCACATGAAAACCTGTGGAACCAGAGAGTACAAATGCGATTGCGGAACTTTGTTTTCTAGGAGGGATAGCTTCATCACGCATCGGGCGTTCTGCGATGCTTTGGCGGAGGAGAGCGGTCGGTCCCAGCCACGAACGAGATTGTCGTTCGTAAGCTCGGATTCCAATGCACTGGCCGCCGCCGCGTCAGCCGCCGCTGTTGCTTCTTCGCCGCCTCCACCGCCCCTCACGCCATTGGCTACTGTACTATCTCCTGCTTTGTCCATTCAAAGCTCAGAGCAACCGGACAACCCGATCGGACCTCCGCCTTTAACACCGGCAGTCACAAGCATAACTTCGGCCACCTCCAACGTAACCGACCCGATCAACGGCGGTGGAATCGGTGGCCGTACAAGCATTTTTGCCGGTGTTTTTGCGTCTTCTCCTGCCGTCATTTCCAATGCTGATCCCAATCCACCCCAGCCAATCACCTCCGGCAGCCACCCGGACTGGGTCGATAATCCCCCGTCCACCGCCACCGCTATCACCATTGTTGAGCCCACATCGCTCACTCTCTCGACGTCCCTCTTCCTCTCCTGCAGAAGCTCGGGCTCGTCCATCTTCCAGGACCATCCAACACATTACTTGCCATCGCCGCAGCTGCAGCCACAGCCCGCAGCCATGTCCGCAACCGCGCTGCTGCAGAAGGCTGCCCAAATGGGTGTAACGGGCTCGAACGCCTCTTTGTTTCGTGGCTTTGGGCTGTCAATGTCGTCATCTCACGGCCAAGACACGGCCGCCGCCGCCGCCGCCGCCGGCATCTCCATGACGGCTGGACTCGGGCTAGGACTCAACTCCGATTTAACAGACCTTATGATGGGCCAATCCGCAGCGTTTGGAACCGAGCCCACCACGCGGGATCTGCTTGGACTTGGCATTGGCGGTTCTGCTCTATTCACGTCCTTTGGCGGCGGTAGCTGTGACGTGGATGCTGCTTCACCTTACGGCGGCGGCGGGTCCGGTTGA 1491 59.29 MVAAENNSSPAALSTPSGDEAAVSSSPGVQIEIVGAVAPPKKKRNLPGMPDPDAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSQEIRKRVYVCPEASCVHHNPARALGDLTGIKKHFSRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESGRSQPRTRLSFVSSDSNALAAAASAAAVASSPPPPPLTPLATVLSPALSIQSSEQPDNPIGPPPLTPAVTSITSATSNVTDPINGGGIGGRTSIFAGVFASSPAVISNADPNPPQPITSGSHPDWVDNPPSTATAITIVEPTSLTLSTSLFLSCRSSGSSIFQDHPTHYLPSPQLQPQPAAMSATALLQKAAQMGVTGSNASLFRGFGLSMSSSHGQDTAAAAAAAGISMTAGLGLGLNSDLTDLMMGQSAAFGTEPTTRDLLGLGIGGSALFTSFGGGSCDVDAASPYGGGGSG 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5354386 5357956 - MC08g0661 Mch8g0756 694377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0756 496 MobiDBLite consensus disorder prediction 1 26 - -
Mch8g0756 496 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 172 207 - -
Mch8g0756 496 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Mch8g0756 496 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Mch8g0756 496 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 145 169 - -
Mch8g0756 496 Pfam Zinc-finger of C2H2 type 70 92 IPR013087 -
Mch8g0756 496 MobiDBLite consensus disorder prediction 1 24 - -
Mch8g0756 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Mch8g0756 496 FunFam protein indeterminate-domain 12-like 49 117 - -
Mch8g0756 496 Gene3D Classic Zinc Finger 51 119 - -
Mch8g0756 496 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 468 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch8g0756 496 SMART c2h2final6 70 92 IPR013087 -
Mch8g0756 496 SMART c2h2final6 146 166 IPR013087 -
Mch8g0756 496 SMART c2h2final6 111 141 IPR013087 -
Mch8g0756 496 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Mch8g0756 496 Gene3D Classic Zinc Finger 124 202 - -
Mch8g0756 496 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 107 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1490 Mch-Chr1:16406121 Mch8g0756 Mch-Chr8:5354386 2.32E-123 dispersed
Mch4g1480 Mch-Chr4:18319755 Mch8g0756 Mch-Chr8:5354386 1.74E-66 dispersed
Mch8g0756 Mch-Chr8:5354386 Mch9g0902 Mch-Chr9:7090729 1.17E-100 dispersed
Mch3g1565 Mch-Chr3:17673568 Mch8g0756 Mch-Chr8:5354386 1.07E-66 transposed
Mch3g1793 Mch-Chr3:19137507 Mch8g0756 Mch-Chr8:5354386 9.23E-70 transposed
Mch6g2055 Mch-Chr6:22817996 Mch8g0756 Mch-Chr8:5354386 5.23E-91 transposed
Mch1g1488 Mch-Chr1:16394687 Mch8g0756 Mch-Chr8:5354386 1.40E-114 wgd
Mch11g0205 Mch-Chr11:1311215 Mch8g0756 Mch-Chr8:5354386 8.13E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43820 PF12874 zf-met 0.0036 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0756 K25869 - csv:101217471 558.525