Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0812 AAGAAGGCATCCCAGGCCAGCTCCAGAAAGGGCTGCATGAGGGGCAAAGGGGGCCCTGAGAATGCCTCCTGCACTTACAAAGGCGTCCGCCAGAGGACGTGGGGCAAATGGGTTGCTGAAATCCGCGAGCCCAACCGTGGGGCTCGCCTCTGGCTTGGCACCTTCGACACCTCCCATGACGCAGCCATGGCTTATGACAATGCCGCTCGTCGCCTCTATGGCTCTGAAGCCAAGCTCAATCTCCCTCACCCTCAGATTCCCCCTGCTGCTTCTTCTTCAGCTTCCTCTTCTTCCCACAGTGCAGCCATGGCGGAAGATGCTGCTGCTGCTTCAATCCCCCATCAGAATCCTGCTTCAGAAACACCTCAGAAGTTGGGGGAAAACAACAGCACCATGAGATTTGGGGAGGACCAAATGGAGGGGCTTTGGAGGTCCATGAGCATTAGCATAGATGATTCCATATGGGCAGAGGCAGCCATGTCTTTGGACTTTCCT 495 56.16 KKASQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAMAYDNAARRLYGSEAKLNLPHPQIPPAASSSASSSSHSAAMAEDAAAASIPHQNPASETPQKLGENNSTMRFGEDQMEGLWRSMSISIDDSIWAEAAMSLDFP 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5716897 5717391 + MC08g0710 Mch8g0812 694433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0812 165 SMART rav1_2 25 88 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0812 165 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 2 121 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Mch8g0812 165 MobiDBLite consensus disorder prediction 86 102 - -
Mch8g0812 165 MobiDBLite consensus disorder prediction 114 131 - -
Mch8g0812 165 CDD AP2 24 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0812 165 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0812 165 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0812 165 MobiDBLite consensus disorder prediction 1 24 - -
Mch8g0812 165 MobiDBLite consensus disorder prediction 79 131 - -
Mch8g0812 165 Pfam AP2 domain 26 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0812 165 Gene3D AP2/ERF domain 25 83 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0812 165 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g0812 165 FunFam Ethylene-responsive transcription factor 2 24 83 - -
Mch8g0812 165 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2490 Mch-Chr4:25654366 Mch8g0812 Mch-Chr8:5716897 2.31E-36 dispersed
Mch8g0812 Mch-Chr8:5716897 Mch9g0181 Mch-Chr9:1371168 7.46E-21 dispersed
Mch2g0613 Mch-Chr2:4217427 Mch8g0812 Mch-Chr8:5716897 4.89E-37 transposed
Mch5g1399 Mch-Chr5:14977407 Mch8g0812 Mch-Chr8:5716897 5.23E-34 transposed
Mch11g0153 Mch-Chr11:996211 Mch8g0812 Mch-Chr8:5716897 3.01E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43824 PF00847 AP2 1.50E-14 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0812 - - - 0.0