Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0821 ATGAAGATTCAGTGCGATGTCTGTGAAAAAGGCGATGCCTCGGTGTTCTGTACGGCGGACGAGGCGGTGCTCTGTAATCTCTGCGACCACCGCGTCCACCATGCCAATAAGCTCGCTTCGAAGCACCGGCGATTTTCCCTCCTCCGCCCATCCGCGGCGGAGGCCCCCGTCTGTGACGTCTGCCGGGAGCGGCGAGGTTTCTTGTTCTGTCAGCAGGACAGAGCGATTCTGTGCAGAGAGTGCGATGATCCGATTCATTCGGCCAACGAACTCACTAAGAAGCACGACAGGTTTCTTCTGACTGGTGTTAAGCTCTCCACCACTGCCGCTCTGTACACGCCGCCGCCCTCGGGCGAGAAGCCGATCGGAAGTGGTGGCCGTGGTGTTTCTGATCCCAAGTCAAAGCGTTCCGTTAAGAACCCACCAGCCGTTTCCCCTGCCCCAATAACATGCCCACCAAGTGTTCGCGTAAATGCCCCACAGAACATTCCCCCGGCGGCAGCGGTGAACAAGGGCGGCGGAGGTCTGATTCCGACCGGCGGCGGTGGCTTGGCGAGTAGCATATCGGAATATTTGATGGAGACACTCCCCGGGTGGCACTTCGAAGACTTCCTCGATTCCTCTGTTCCTCCCCCCTTTGTGGAGTGTGGAGGAGTGGGATTGCCATTTGTGGAAGGTGAAATTGACGGTTGTTTTTCATCATCGGAAAGTTTGGAGCTTTGGGTCCCTCAGGGGCCACCACCGGCGCTGTATGGTTCAGGATTAATGACGATGAATAATAGTAATACCAATAATGGGTTGAAGGAGACAAAGGAATTAGGCATAAATTCATCAAAAGTAGTCAATAGATCTGTGTGGACAGATGATGGTTTCACTGTGCCACAGATCACAAGTACTGCTACCCCATCTGCAGGCTTTAAGAGATCCAGACCTTTTTGGTAA 942 54.03 MKIQCDVCEKGDASVFCTADEAVLCNLCDHRVHHANKLASKHRRFSLLRPSAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTKKHDRFLLTGVKLSTTAALYTPPPSGEKPIGSGGRGVSDPKSKRSVKNPPAVSPAPITCPPSVRVNAPQNIPPAAAVNKGGGGLIPTGGGGLASSISEYLMETLPGWHFEDFLDSSVPPPFVECGGVGLPFVEGEIDGCFSSSESLELWVPQGPPPALYGSGLMTMNNSNTNNGLKETKELGINSSKVVNRSVWTDDGFTVPQITSTATPSAGFKRSRPFW 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5837414 5839680 + MC08g0718 Mch8g0821 694442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0821 313 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Mch8g0821 313 Gene3D Classic Zinc Finger 1 95 - -
Mch8g0821 313 Pfam B-box zinc finger 55 96 IPR000315 GO:0008270(InterPro)
Mch8g0821 313 CDD Bbox1_BBX-like 5 47 IPR049808 -
Mch8g0821 313 MobiDBLite consensus disorder prediction 111 151 - -
Mch8g0821 313 FunFam B-box zinc finger protein 21 1 98 - -
Mch8g0821 313 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 301 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Mch8g0821 313 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Mch8g0821 313 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Mch8g0821 313 CDD Bbox1_BBX-like 57 100 IPR049808 -
Mch8g0821 313 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0821 Mch-Chr8:5837414 Mch8g2392 Mch-Chr8:27003520 5.61E-06 dispersed
Mch10g1031 Mch-Chr10:7504337 Mch8g0821 Mch-Chr8:5837414 6.98E-35 transposed
Mch7g0133 Mch-Chr7:1637820 Mch8g0821 Mch-Chr8:5837414 5.19E-35 transposed
Mch11g0147 Mch-Chr11:924436 Mch8g0821 Mch-Chr8:5837414 2.88E-67 wgd
Mch2g1076 Mch-Chr2:7253384 Mch8g0821 Mch-Chr8:5837414 6.20E-46 wgd
Mch4g0563 Mch-Chr4:3576947 Mch8g0821 Mch-Chr8:5837414 7.81E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43826 PF00643 zf-B_box 1.50E-05 No_clan Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0821 - - - 0.0