Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0842 ATGTCGAACGCCGTCGAAGATCTCAGCCACCGCCTCCGGCACTCCGATTTCCGATTTCATCTCCTTCACCCTCACTCTCAGCACCATCGCGACATGTCTTCTTCTTCTTCGTCTTCAGCTCCAGCTCTTCCTCTGTGTTTCCGTCAGTATCATCGGCCTCCTCCGCCTCGGCTGAATCAATCCGATACTTGTGCTGGCCGTCTCGCTCCCGACGCGCATTCTACTGCTGCTGCTACGCTTGACTTGAAACAAACATATGACATTAATGCCGCTGAGGCTCTGGCTAGTAGACGAGCTTTAGCTTCTGAACAGAGGATGCGATCTGATGATTCTTCATGTGAACCAGTATCCTGTGCAAATGGAAAGCAGAACAAAAAACCGAAGTTCCAGAAAAATTCACAGTCTAGGACTGAGAGATCAATAGATGAGCCTCTTGATGGTCTTAATCTACCTACTAATGGTCGGTACGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTGGTTCAGGAGGCTGAAGATGGAACACTCGATTTAAATAAAACTGCAGACGTATTAAAGGTCCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGACTTATAGAGAAAACCACGATGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTAGTAGATTAAAGGCTGAAGTTGAAAGTTTGTATGAAGATGAACGTAGACTTGATGATATAATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAATCACAGAAAGAACCTTTTTGTTACAGAAGAAGATATCTTGCAAATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGTTGTATTGAAGTGCCTGATCCCGATGAGGAGGCTTGTTTTTCTGAGAGACAATGTAGAATGATCATCAAAAGCACCACTGGGCCAATCAGTCTATACCTCTTGAGGAACCAAAAACAAGGGCAAGAAGGAAGTATTTCCAAGCAAGCGAAACTGTCTTCACAACAGCAAAAGAATCCTAATTTATCTACTACCAACAATGCCTGTTCTCCTTTCCGGGAGTTTCATGGGATGCAGAGAATTTTACCTTTACATCATAATATAGACGATGATTATTGGTTCCACTCTAATTCTCAAGTGAGTATTACGCATTTATGGGGTGAAGAACACAACTTTTAA 1239 43.1 MSNAVEDLSHRLRHSDFRFHLLHPHSQHHRDMSSSSSSSAPALPLCFRQYHRPPPPRLNQSDTCAGRLAPDAHSTAAATLDLKQTYDINAAEALASRRALASEQRMRSDDSSCEPVSCANGKQNKKPKFQKNSQSRTERSIDEPLDGLNLPTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTMNHIRWKGCERRGPQELNDQVSRLKAEVESLYEDERRLDDIIRMKQELLRNLEENANHRKNLFVTEEDILQIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRMIIKSTTGPISLYLLRNQKQGQEGSISKQAKLSSQQQKNPNLSTTNNACSPFREFHGMQRILPLHHNIDDDYWFHSNSQVSITHLWGEEHNF 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6009724 6014286 - MC08g0737 Mch8g0842 694463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0842 412 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch8g0842 412 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Mch8g0842 412 MobiDBLite consensus disorder prediction 101 150 - -
Mch8g0842 412 Coils Coil 247 267 - -
Mch8g0842 412 MobiDBLite consensus disorder prediction 344 367 - -
Mch8g0842 412 Gene3D - 151 222 IPR036388 -
Mch8g0842 412 CDD E2F_DD 231 335 IPR032198 GO:0046983(InterPro)
Mch8g0842 412 SUPERFAMILY E2F-DP heterodimerization region 231 336 IPR037241 -
Mch8g0842 412 FunFam E2F transcription factor 1 150 222 - -
Mch8g0842 412 Gene3D - 227 338 - -
Mch8g0842 412 PANTHER TRANSCRIPTION FACTOR E2F 101 407 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Mch8g0842 412 MobiDBLite consensus disorder prediction 111 130 - -
Mch8g0842 412 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch8g0842 412 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Mch8g0842 412 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1476 Mch-Chr3:16986464 Mch8g0842 Mch-Chr8:6009724 6.02E-07 dispersed
Mch8g0842 Mch-Chr8:6009724 Mch2g0227 Mch-Chr2:1725575 4.46E-67 transposed
Mch8g0842 Mch-Chr8:6009724 Mch1g0971 Mch-Chr1:12866209 3.51E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43830 PF16421 E2F_CC-MB 1.60E-27 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0842 K06620 - csv:101211469 613.609