Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0842 ATGTCGAACGCCGTCGAAGATCTCAGCCACCGCCTCCGGCACTCCGATTTCCGATTTCATCTCCTTCACCCTCACTCTCAGCACCATCGCGACATGTCTTCTTCTTCTTCGTCTTCAGCTCCAGCTCTTCCTCTGTGTTTCCGTCAGTATCATCGGCCTCCTCCGCCTCGGCTGAATCAATCCGATACTTGTGCTGGCCGTCTCGCTCCCGACGCGCATTCTACTGCTGCTGCTACGCTTGACTTGAAACAAACATATGACATTAATGCCGCTGAGGCTCTGGCTAGTAGACGAGCTTTAGCTTCTGAACAGAGGATGCGATCTGATGATTCTTCATGTGAACCAGTATCCTGTGCAAATGGAAAGCAGAACAAAAAACCGAAGTTCCAGAAAAATTCACAGTCTAGGACTGAGAGATCAATAGATGAGCCTCTTGATGGTCTTAATCTACCTACTAATGGTCGGTACGACAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTGGTTCAGGAGGCTGAAGATGGAACACTCGATTTAAATAAAACTGCAGACGTATTAAAGGTCCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGACTTATAGAGAAAACCACGATGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATCAAGTTAGTAGATTAAAGGCTGAAGTTGAAAGTTTGTATGAAGATGAACGTAGACTTGATGATATAATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAATCACAGAAAGAACCTTTTTGTTACAGAAGAAGATATCTTGCAAATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGTTGTATTGAAGTGCCTGATCCCGATGAGGAGGCTTGTTTTTCTGAGAGACAATGTAGAATGATCATCAAAAGCACCACTGGGCCAATCAGTCTATACCTCTTGAGGAACCAAAAACAAGGGCAAGAAGGAAGTATTTCCAAGCAAGCGAAACTGTCTTCACAACAGCAAAAGAATCCTAATTTATCTACTACCAACAATGCCTGTTCTCCTTTCCGGGAGTTTCATGGGATGCAGAGAATTTTACCTTTACATCATAATATAGACGATGATTATTGGTTCCACTCTAATTCTCAAGTGAGTATTACGCATTTATGGGGTGAAGAACACAACTTTTAA 1239 43.1 MSNAVEDLSHRLRHSDFRFHLLHPHSQHHRDMSSSSSSSAPALPLCFRQYHRPPPPRLNQSDTCAGRLAPDAHSTAAATLDLKQTYDINAAEALASRRALASEQRMRSDDSSCEPVSCANGKQNKKPKFQKNSQSRTERSIDEPLDGLNLPTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTMNHIRWKGCERRGPQELNDQVSRLKAEVESLYEDERRLDDIIRMKQELLRNLEENANHRKNLFVTEEDILQIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRMIIKSTTGPISLYLLRNQKQGQEGSISKQAKLSSQQQKNPNLSTTNNACSPFREFHGMQRILPLHHNIDDDYWFHSNSQVSITHLWGEEHNF 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6009724 6014286 - MC08g0737 Mch8g0842 694463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0842 412 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch8g0842 412 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Mch8g0842 412 MobiDBLite consensus disorder prediction 101 150 - -
Mch8g0842 412 Coils Coil 247 267 - -
Mch8g0842 412 MobiDBLite consensus disorder prediction 344 367 - -
Mch8g0842 412 Gene3D - 151 222 IPR036388 -
Mch8g0842 412 CDD E2F_DD 231 335 IPR032198 GO:0046983(InterPro)
Mch8g0842 412 SUPERFAMILY E2F-DP heterodimerization region 231 336 IPR037241 -
Mch8g0842 412 FunFam E2F transcription factor 1 150 222 - -
Mch8g0842 412 Gene3D - 227 338 - -
Mch8g0842 412 PANTHER TRANSCRIPTION FACTOR E2F 101 407 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Mch8g0842 412 MobiDBLite consensus disorder prediction 111 130 - -
Mch8g0842 412 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Mch8g0842 412 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Mch8g0842 412 MobiDBLite consensus disorder prediction 46 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0842 K06620 - - csv:101211469 613.609
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1476 Mch-Chr3:16986464 Mch8g0842 Mch-Chr8:6009724 6.02E-07 dispersed
Mch8g0842 Mch-Chr8:6009724 Mch2g0227 Mch-Chr2:1725575 4.46E-67 transposed
Mch8g0842 Mch-Chr8:6009724 Mch1g0971 Mch-Chr1:12866209 3.51E-64 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch3g1476 . 3 375 E2F-DP Transcription Factor Family AT3G48160 55.1 8.3e-105 377.5
Mch10g0326 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 5.9e-60 228.0
Mch2g0227 . 21 461 E2F-DP Transcription Factor Family AT2G36010 55.2 1.3e-120 430.3
Mch1g0971 . 387 764 E2F-DP Transcription Factor Family AT2G36010 57.6 2.4e-106 382.9
Mch2g0227 . 24 463 E2F-DP Transcription Factor Family AT5G22220 56.2 8.7e-114 407.5
Mch1g0971 . 386 780 E2F-DP Transcription Factor Family AT5G22220 50.9 5.7e-89 325.1
Mch8g0842 . 153 406 E2F-DP Transcription Factor Family AT1G47870 54.7 8.8e-67 251.1
Mch2g0227 . 139 416 E2F-DP Transcription Factor Family AT1G47870 51.1 1.1e-61 234.2
Mch10g0326 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 5.9e-60 228.0
Mch2g0227 . 24 463 E2F-DP Transcription Factor Family AT5G22220 56.2 8.7e-114 407.5
Mch1g0971 . 386 780 E2F-DP Transcription Factor Family AT5G22220 50.9 5.7e-89 325.1
Mch2g0227 . 21 461 E2F-DP Transcription Factor Family AT2G36010 55.2 1.3e-120 430.3
Mch1g0971 . 387 764 E2F-DP Transcription Factor Family AT2G36010 57.6 2.4e-106 382.9
Mch8g0842 . 153 406 E2F-DP Transcription Factor Family AT1G47870 54.7 8.8e-67 251.1
Mch2g0227 . 139 416 E2F-DP Transcription Factor Family AT1G47870 51.1 1.1e-61 234.2
Mch3g1476 . 3 375 E2F-DP Transcription Factor Family AT3G48160 55.1 8.3e-105 377.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43830 PF16421 E2F_CC-MB 1.60E-27 No_clan Mch TF