Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0857 ATGGCTTCCCCTGTTCGGTTTCTGTTGGCTCTGTTTACTCTGCTGCTCTTCGTATCAGGTGGGTTTTCCACGAGCTTTACTTTTCTTAACAGGTGTGGCTTCACGGTCTGGCCGGGCGTTTTGTCGAACAGCGGCGTTCCGCCACTGTCCATCACCGGATTTAGCCTACAGACCGGGGAGTCCAAGACGCTGCCGGCGCCGGCGTCTTGGGGAGGCCGTTTCTGGGGCCGGACCCACTGCTCCGAAGATTCTACTGGTAAATTCTCCTGTGCCACCGGCGACTGTGGATCCGGGAAATTGGAGTGCGCCGGCAGCGGAGCGACGCCGCCGGCGACTCTGGCGGAGTTCACTCTCGACGGATCCGGCGGGCTCGATTTCTTCGACGTCAGCTTGGTGGACGGGTATAATCTTCCGATGATGGTGGTGCCTCAGGGCGGCACCGGCGACAACTGTACGAGCACCGGCTGCGTGGTGGATCTGAACGGCGCTTGTCCGTCGGAGCTCCGGGTTACGAACGCCGACGGGAGAGATGGAGTCGCGTGTAAAAGCGCGTGCGATGCCTTCAACCAGCCGCAGTATTGCTGCACAGGCGCGTACGGGTCACCGGACACTTGCCAGCCGTCGATGTACTCCCAGATCTTCAAGAGAGCGTGCCCACGCGCTTACAGCTACGCGTACGACGATAAGACCAGCACCTTCACCTGCGCCACAGCCGACTACGTCATCACCTTCTGTCCCTCGCCAAATACCAGCCAAAAGTCATCGGAGGCACAGAATTCACCGGCGACGGCGAACCCATCTTCCGGCGGCGACAGCGCGATGGTGTACGAAGGCGCATCCCTGATCCAAACCGCCGCAGCGCCGCCGCGCGCGGCCGGACTCGGATTGGCAGGTGCGGTGGCGATTTGGTGGTTGTGGCAGCGGCTGTTCTAA 933 61.41 MASPVRFLLALFTLLLFVSGGFSTSFTFLNRCGFTVWPGVLSNSGVPPLSITGFSLQTGESKTLPAPASWGGRFWGRTHCSEDSTGKFSCATGDCGSGKLECAGSGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMMVVPQGGTGDNCTSTGCVVDLNGACPSELRVTNADGRDGVACKSACDAFNQPQYCCTGAYGSPDTCQPSMYSQIFKRACPRAYSYAYDDKTSTFTCATADYVITFCPSPNTSQKSSEAQNSPATANPSSGGDSAMVYEGASLIQTAAAPPRAAGLGLAGAVAIWWLWQRLF 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6102803 6105495 + MC08g0750 Mch8g0857 694478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0857 310 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Mch8g0857 310 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Mch8g0857 310 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Mch8g0857 310 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Mch8g0857 310 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Mch8g0857 310 MobiDBLite consensus disorder prediction 250 270 - -
Mch8g0857 310 Pfam Thaumatin family 30 246 IPR001938 -
Mch8g0857 310 PIRSF PR5 1 286 IPR001938 -
Mch8g0857 310 PANTHER OS03G0233200 PROTEIN 11 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Mch8g0857 310 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Mch8g0857 310 SUPERFAMILY Osmotin, thaumatin-like protein 25 247 IPR037176 -
Mch8g0857 310 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
Mch8g0857 310 SMART tha2 26 246 IPR001938 -
Mch8g0857 310 Gene3D Thaumatin 24 246 IPR037176 -
Mch8g0857 310 CDD TLP-PA 25 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1760 Mch-Chr10:17448613 Mch8g0857 Mch-Chr8:6102803 4.54E-118 dispersed
Mch2g1004 Mch-Chr2:6814752 Mch8g0857 Mch-Chr8:6102803 4.71E-122 dispersed
Mch8g0857 Mch-Chr8:6102803 Mch8g0859 Mch-Chr8:6115518 4.49E-94 proximal
Mch10g1462 Mch-Chr10:14520708 Mch8g0857 Mch-Chr8:6102803 1.43E-48 transposed
Mch4g1746 Mch-Chr4:20536355 Mch8g0857 Mch-Chr8:6102803 1.46E-76 transposed
Mch5g1704 Mch-Chr5:17764027 Mch8g0857 Mch-Chr8:6102803 3.64E-42 transposed
Mch8g1605 Mch-Chr8:12992386 Mch8g0857 Mch-Chr8:6102803 4.51E-72 transposed
Mch9g0534 Mch-Chr9:3929608 Mch8g0857 Mch-Chr8:6102803 2.82E-92 transposed
Mch1g1590 Mch-Chr1:17070513 Mch8g0857 Mch-Chr8:6102803 8.01E-103 wgd
Mch11g0107 Mch-Chr11:714752 Mch8g0857 Mch-Chr8:6102803 1.78E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0857 - - - 0.0