Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0869 ATGGCATCAATGGCCAAACTTCTTCTGCCATTTGTGCTCTGCAACTTCTTCTTTACCTCCGCTGTGATCGAAGCATTTACGGCGTCGGGATGGAATCAAGCTCACGCCACCTTCTATGGCGGCAGTGATGCTTCAGGGACAATGGGTGGAGCTTGTGGGTACGGAAACTTGTATTCGACAGGGTACGGTACGAGGACGGCGGCGCTGAGCACGGCGTTGTTCAACGACGGAGCTTCTTGCGGGCAGTGCTTTAAGATTATGTGCGATTACAAGACGGATCCACGGTGGTGCGTTAAAGGGACGTCGGTGACGGTGACGGCCACCAACTTCTGCCCACCCAACTATGCTCTGCCCAACAACGACGGCGGGTGGTGCAACCCTCCGCTTCAGCACTTCGACATGGCCCAACCCGCCTGGGAGAAGATCGGCATTTATAGAGGCGGAATCATCCCCGTCCTCTTCCAAAGCTCACCACCAGCGATGGGCAGACCCAAGTTTTCAGCAACGTGGTGCCCTCTGGCTGGAGATTTGGCCAAACTTTTGCAACCAATGTCCAATTCCGCTGAG 567 55.38 MASMAKLLLPFVLCNFFFTSAVIEAFTASGWNQAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCFKIMCDYKTDPRWCVKGTSVTVTATNFCPPNYALPNNDGGWCNPPLQHFDMAQPAWEKIGIYRGGIIPVLFQSSPPAMGRPKFSATWCPLAGDLAKLLQPMSNSAE 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6201602 6203657 + MC08g0761 Mch8g0869 694490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0869 189 Gene3D - 17 158 IPR036908 -
Mch8g0869 189 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Mch8g0869 189 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Mch8g0869 189 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Mch8g0869 189 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Mch8g0869 189 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 158 IPR007112 -
Mch8g0869 189 PANTHER EXPANSIN-A15 14 156 IPR002963 GO:0009664(InterPro)
Mch8g0869 189 CDD DPBB_EXPA_N 30 158 - -
Mch8g0869 189 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Mch8g0869 189 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Mch8g0869 189 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Mch8g0869 189 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Mch8g0869 189 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Mch8g0869 189 FunFam Expansin 20 183 - -
Mch8g0869 189 SUPERFAMILY Barwin-like endoglucanases 30 156 IPR036908 -
Mch8g0869 189 SMART dpbb_1 66 154 IPR007112 -
Mch8g0869 189 Pfam Lytic transglycolase 66 153 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0869 Mch-Chr8:6201602 Mch9g1387 Mch-Chr9:16250690 8.65E-68 dispersed
Mch8g0869 Mch-Chr8:6201602 Mch9g2116 Mch-Chr9:22063783 1.07E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0869 - - - 0.0