Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0878 ATGATGAACGACGGCCAGGAAACTCCGGAGCCATTGGTGTACGTTCACGGCGACCTCGATTTGAAAATCATTGAGGCGCGCCGTTTGCCTAATATGGATTTGTTGACGGAGCGTATTCGCCGGTTTTTTACGGCCTTTACCTCTTGTCGGAAACCGTTTTCGAAGAAGGATTCCGATCACCAGCACCATCGCAAAATCATTACTAGCGATCCTTACGTCACGGTTTGTCTCGCCGGAGCGACGGTCGCTCGGACGCGGGTTATTTCGAACTCTCAGAACCCTATCTGGAACGAGCACTTCAAAATCCCGCTTGCTCATCCGGTCTCGCAGGTTGAGTTTCATGTGAAGGACAACGACGTGTTTGGCGCCGACTTGATTGGCATCGCTACGGTCTCCGCGCGCAGAGTAATTTCTGGCGAAACAATCAATGATTGGTTTCCGATTATTGGTTCGTTTGGGAAACCGCCTAAACCGGATGCGGCTGTGCGTTTGGAAATGAAATTCACGAAGTGCGAGGACAATCCTCTGTACCGTCACGGCATTGCTGCCGATCCAGATCATTTCGGAGTTCGGAATTGCTATTTTCCGGTGCGGCACGGGGGTTCTGTAACGCTTTATCAGGACGCTCACGTTTCTGATTCCACGTTGGAGCAGATTGAATTGGAAGAGGGGAAAATGTATAATCATGGGAATTGCTGGGAGGATATATGCCATGCGATTTTGGAAGCTCACCATTTAGTCTACATCGCCGGTTGGTCCATATATCATAAGGTGAAGCTGGTGAGGGAGCCTTCGAAGCCATTGCCTAATGGTGGGGATTTGAACTTGGGGGAATTGCTCAAGTACAAATCACAGGAAGGGGTGCGAGTCTTGTTGTTGGTTTGGGATGACAAGACCTCCCACAGCAAGTTCTTCATCAATACGGCTGGAGTGATGCAGACTCATGATGAGGAGACCCGGAAGTTTTTTAAGCACTCTACTGTGTCATGTGTGCTGTCACCCCGATATGCCAGCATTTATCTCATGGTTCAGGTTGTTGGAACCCTTTTCACCCACCACCAGAAATGTGTGATCGTGGATACGCAAGCATCTGGAAATTACCGGAAGATCAGTGCTTTTATTGGAGGACTTGACCTTTGTGATGGTCGTTATGATACTCCTGAGCATCGGTTGTTGAAAGATCTTGACACTGTATTTGAGGAGGATTATCACAATCCAACTTTTTCTGGAGGCACAAAGGCTCCTCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGGCCTGCCGCATATGATGTGCTTACTAACTTTGAACAACGATGGAGAAAAGCCACAAAATGGTCTGAATTAGGTCAGCGGTTCAAAAGAGTATCGCACTGGCATGAAGATGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTCAGTCGGTTCCCAATGATGATCCTTTGTTATGGGTTTCCAAGGAAAATGATCCTCACAATTGGCATGTTCAGGTTTTCCGATCCATAGATTCGGGATCTTTAAAAGGATTTCCCAAAGATGTTTTTCAAGCTGAGTCGCAGAATCTTGTTTGTGCAAAAAATTTGGTTATTGACAAAAGCATTCAAACAGCATATATCCAAGCTATTAGATCTGCCCAACGCTTCGTATACATCGAGAATCAGTATTTTCTTGGATCATCGTTTGCATGGCCTTCATATAAAGAAGCAGGTGCCGATAATCTTATTCCAATCGAGTTGGCGTTGAAGATTGCTAGTAAGATAAGAGCCAATGAGAGGTTTGCTGTATACGTTGTGATACCAATGTGGCCTGAAGGTGCTCCCACTTCTGTTTCTGTGCAAGAAATTCTGTTTTGGCAGGGCCAGACAATACAAATGATGTATGAAATCATTGGACGGGAGTTGAAATATATGAATATCCAGAATGCTCATCCCTCGGACTACTTGAACTTTTACTGTCTTGGAAATAGGGAACCGCACGAGGACTTATCATCTTCCTCTGGTCATTCATCCAAGACCGAAGATGTGGTTTCAGACTCGCAAAAGTTCCGTAGATTCATGATATATGTACATGCCAAAGGAATGGTTGTTGATGATGAGTATGTCATAGTAGGGTCTGCAAATATAAACCAAAGATCAATGGCTGGTTCAAGGGACACTGAGATTGCCATGGGTGCATATCAACCAAGTTACACATGGGGTAAGAAGAAGCAACATCCACGTGGCCAGATTTATGGCTATAGAATGTCGCTCTGGGCTGAACATTTGGGAAAAATTGATGGTTGCTTCAAGGAGCCTGAAACTTTGGATTGTGTGAACACTGTCAATAAGATAGCTGAAGATAACTGGAAGAAATACACAGCAGAGGAATTTGCACCACTGCAAGGGCACCTCCTTAAATACCCGATTGAGGTCAGCGAAAGCGGCAAGGTTGGTCAGTTGAACGGACACGAGACCTTCCCCGACGTCGGTGGTAAGGTCCTCGGAGCTCGATCAAATCTCCCTGATGCTCTTACTACATAA 2538 45.67 MMNDGQETPEPLVYVHGDLDLKIIEARRLPNMDLLTERIRRFFTAFTSCRKPFSKKDSDHQHHRKIITSDPYVTVCLAGATVARTRVISNSQNPIWNEHFKIPLAHPVSQVEFHVKDNDVFGADLIGIATVSARRVISGETINDWFPIIGSFGKPPKPDAAVRLEMKFTKCEDNPLYRHGIAADPDHFGVRNCYFPVRHGGSVTLYQDAHVSDSTLEQIELEEGKMYNHGNCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGDLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTAGVMQTHDEETRKFFKHSTVSCVLSPRYASIYLMVQVVGTLFTHHQKCVIVDTQASGNYRKISAFIGGLDLCDGRYDTPEHRLLKDLDTVFEEDYHNPTFSGGTKAPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSHWHEDALIKLERISWILSPSQSVPNDDPLLWVSKENDPHNWHVQVFRSIDSGSLKGFPKDVFQAESQNLVCAKNLVIDKSIQTAYIQAIRSAQRFVYIENQYFLGSSFAWPSYKEAGADNLIPIELALKIASKIRANERFAVYVVIPMWPEGAPTSVSVQEILFWQGQTIQMMYEIIGRELKYMNIQNAHPSDYLNFYCLGNREPHEDLSSSSGHSSKTEDVVSDSQKFRRFMIYVHAKGMVVDDEYVIVGSANINQRSMAGSRDTEIAMGAYQPSYTWGKKKQHPRGQIYGYRMSLWAEHLGKIDGCFKEPETLDCVNTVNKIAEDNWKKYTAEEFAPLQGHLLKYPIEVSESGKVGQLNGHETFPDVGGKVLGARSNLPDALTT 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6261288 6267623 + MC08g0770 Mch8g0878 694499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0878 845 SMART C2_3c 18 145 IPR000008 -
Mch8g0878 845 CDD C2_plant_PLD 13 169 - -
Mch8g0878 845 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 691 718 IPR001736 GO:0003824(InterPro)
Mch8g0878 845 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 348 383 IPR001736 GO:0003824(InterPro)
Mch8g0878 845 SUPERFAMILY Phospholipase D/nuclease 195 454 - -
Mch8g0878 845 PIRSF PLD_plant 4 845 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Mch8g0878 845 ProSiteProfiles C2 domain profile. 1 146 IPR000008 -
Mch8g0878 845 FunFam Phospholipase D delta 223 463 - -
Mch8g0878 845 Gene3D C2 domain 15 177 IPR035892 -
Mch8g0878 845 Pfam Phospholipase D C terminal 766 835 IPR024632 -
Mch8g0878 845 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 16 170 IPR035892 -
Mch8g0878 845 Pfam Phospholipase D Active site motif 693 718 IPR001736 GO:0003824(InterPro)
Mch8g0878 845 SMART pld_4 348 383 IPR001736 GO:0003824(InterPro)
Mch8g0878 845 SMART pld_4 691 718 IPR001736 GO:0003824(InterPro)
Mch8g0878 845 PANTHER PHOSPHOLIPASE D 14 833 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Mch8g0878 845 Gene3D Endonuclease Chain A 217 466 - -
Mch8g0878 845 Pfam C2 domain 18 147 IPR000008 -
Mch8g0878 845 SUPERFAMILY Phospholipase D/nuclease 537 766 - -
Mch8g0878 845 Gene3D Endonuclease Chain A 516 737 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1478 Mch-Chr10:14736686 Mch8g0878 Mch-Chr8:6261288 1.15E-300 dispersed
Mch1g1623 Mch-Chr1:17265009 Mch8g0878 Mch-Chr8:6261288 0 dispersed
Mch7g1204 Mch-Chr7:15672252 Mch8g0878 Mch-Chr8:6261288 2.24E-37 dispersed
Mch8g0457 Mch-Chr8:3252667 Mch8g0878 Mch-Chr8:6261288 1.10E-214 dispersed
Mch8g0878 Mch-Chr8:6261288 Mch8g1128 Mch-Chr8:8063013 6.28E-236 dispersed
Mch8g0878 Mch-Chr8:6261288 Mch7g0737 Mch-Chr7:11966031 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0878 K01115 - csv:101213442 1592.02