Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0911 ATGGGTCGGGGGAAGATTGAAATCAAGCGGATTGAGAATGCCAATAGCAGGCAAGTCACGTTCTCCAAGAGGCGAGCTGGGCTTCTCAAGAAGGCTCAGGAACTTGCCATTCTCTGCGATGCTGAAGTTGCTGTTATCATTTTCTCCAATACTGGCAAGCTTTTCGAGTTTTCCAGTTCTGGCATGAAGCATACTCTTTCAAGATACAACCGATGTGTAGATTCTTCAGAGGCTGCGGTAGACGGGCGCAAGGTTGAGAAGCAAGAGCACGAGGAGGTAGACATTCTAAGAGACGAAATAACAACTCTACAAATGAAACAATTACAGCTATTGGGAAAGGATCTGACTGGCTTAGGCTTCAAAGAATTGCAGAACTTGGAGCAACAACTAAATGAAGGGCTATTAATGGTGAAGGAGAAGAAGGAACAGTTACTGATGGAACAACTAGAGCAATCAAGGGTACAGGAACAGCGAGCGATGCTGGAGAATGAAACTTTGCGGAGACAGGCAAGCAGTGAGCTTCGATGTCTGTTTCCGCCAGTTGACTGTCCGCTACCTGCTTATCTTGAATACTGCTCCCTAGAACAGAAGAACATTGGCCTTAGAAGCCCTGATGCGGCCTGCAACTCAGAAATAGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCCCATGTGTATTGCAAGAGAAAGGAGGCTGAGAGAGATACTCATTCCAATAATTCAGGGAGCCAAATGGGTCTACTCTGA 759 46.64 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCVDSSEAAVDGRKVEKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLMVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQASSELRCLFPPVDCPLPAYLEYCSLEQKNIGLRSPDAACNSEIERGDSDTTLHLGLPSHVYCKRKEAERDTHSNNSGSQMGLL 252
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 6519804 6525703 + MC08g0798 Mch8g0911 694532
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0911 252 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g0911 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0911 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch8g0911 252 Coils Coil 123 143 - -
Mch8g0911 252 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch8g0911 252 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0911 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0911 252 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0911 252 Coils Coil 149 169 - -
Mch8g0911 252 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0911 252 Pfam K-box region 85 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g0911 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0911 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0911 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0911 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g0911 252 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g0833 Mch-Chr7:12902306 Mch8g0911 Mch-Chr8:6519804 1.07E-15 dispersed
Mch8g0911 Mch-Chr8:6519804 Mch8g2368 Mch-Chr8:26794936 5.53E-28 dispersed
Mch8g0911 Mch-Chr8:6519804 Mch1g0406 Mch-Chr1:8244138 2.47E-39 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43831 PF01486 K-box 3.00E-17 No_clan Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0911 - - - 0.0