Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch8g0911 | ATGGGTCGGGGGAAGATTGAAATCAAGCGGATTGAGAATGCCAATAGCAGGCAAGTCACGTTCTCCAAGAGGCGAGCTGGGCTTCTCAAGAAGGCTCAGGAACTTGCCATTCTCTGCGATGCTGAAGTTGCTGTTATCATTTTCTCCAATACTGGCAAGCTTTTCGAGTTTTCCAGTTCTGGCATGAAGCATACTCTTTCAAGATACAACCGATGTGTAGATTCTTCAGAGGCTGCGGTAGACGGGCGCAAGGTTGAGAAGCAAGAGCACGAGGAGGTAGACATTCTAAGAGACGAAATAACAACTCTACAAATGAAACAATTACAGCTATTGGGAAAGGATCTGACTGGCTTAGGCTTCAAAGAATTGCAGAACTTGGAGCAACAACTAAATGAAGGGCTATTAATGGTGAAGGAGAAGAAGGAACAGTTACTGATGGAACAACTAGAGCAATCAAGGGTACAGGAACAGCGAGCGATGCTGGAGAATGAAACTTTGCGGAGACAGGCAAGCAGTGAGCTTCGATGTCTGTTTCCGCCAGTTGACTGTCCGCTACCTGCTTATCTTGAATACTGCTCCCTAGAACAGAAGAACATTGGCCTTAGAAGCCCTGATGCGGCCTGCAACTCAGAAATAGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCCCATGTGTATTGCAAGAGAAAGGAGGCTGAGAGAGATACTCATTCCAATAATTCAGGGAGCCAAATGGGTCTACTCTGA | 759 | 46.64 | MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCVDSSEAAVDGRKVEKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLMVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQASSELRCLFPPVDCPLPAYLEYCSLEQKNIGLRSPDAACNSEIERGDSDTTLHLGLPSHVYCKRKEAERDTHSNNSGSQMGLL | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 6519804 | 6525703 | + | MC08g0798 | Mch8g0911 | 694532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch8g0911 | 252 | ProSiteProfiles | K-box domain profile. | 86 | 177 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Mch8g0911 | 252 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch8g0911 | 252 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 202 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Mch8g0911 | 252 | Coils | Coil | 123 | 143 | - | - | |
| Mch8g0911 | 252 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Mch8g0911 | 252 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch8g0911 | 252 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch8g0911 | 252 | Gene3D | - | 13 | 80 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch8g0911 | 252 | Coils | Coil | 149 | 169 | - | - | |
| Mch8g0911 | 252 | SUPERFAMILY | SRF-like | 2 | 75 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch8g0911 | 252 | Pfam | K-box region | 85 | 169 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Mch8g0911 | 252 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch8g0911 | 252 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch8g0911 | 252 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch8g0911 | 252 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch8g0911 | 252 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch7g0833 | Mch-Chr7:12902306 | Mch8g0911 | Mch-Chr8:6519804 | 1.07E-15 | dispersed | |
| Mch8g0911 | Mch-Chr8:6519804 | Mch8g2368 | Mch-Chr8:26794936 | 5.53E-28 | dispersed | |
| Mch8g0911 | Mch-Chr8:6519804 | Mch1g0406 | Mch-Chr1:8244138 | 2.47E-39 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43831 | PF01486 | K-box | 3.00E-17 | No_clan | Mch | TF |
Pathway information