Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g0932 | ATGTGCGGTGGTCCAGAACAATCAAATTCTGCATCTACTACTTCATCAGCAAGCTCACCTAACCCCAAAGACATGAATCATTTAGCCGTTGATTGTGAAGATTCTTTTTATAGTTTACTGGAGCTTGCCTCTGACAACGATGTAGAGGGCTTCAAGCGTTTGATGGATTCTGATTTGCTTTCACTTAACAAGTCTGGACTCTGGTATGTTCGACAAAAAGGTTCCAAACAAGTTGTTCATGAGCATAGAACACCCCTGATGGTTGCTGCCACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCTTTTCCTGAGGTTGATGTTAATCTGTCGTCTGGCACAGACAAGAGCACTGCTCTCCACTGTGCTGCTTCCAGTGGATCTGTGAATGCTGTTGATATTGTTGATATGCTTTTATCGGCTGGTGCTGACCCAAGCTCCAAGGATGTTAATGGTGATCGTCCTGTTGATGTCATTTTTGTTCACCCAAAGCTGCAGAAGCAGAACACAAGGTTCAGGCTTGAGGAACTTCTCAATAATCATGCTTCCAATGGATCTATGGATGTTTCCTGTTTGCGTTTATCAATCAAAACGCCCGATTCAGAGTCACCATCACTCTCCTCATCATTGGAGGATGAATTTCCATCTCCTCCCAAGTCCATGTCTTCTCCCAAATTTACTGATGGGTTTGCAAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGACATTAAGAACAGTATATATGCAACTGATGAGTTTCGCATGTTCTCATTCAAAGTGAGACCTTGTTCTAGGGCCTATTCCCATGATTGGACTGAGTGTCCGTTTGTCCACCCAGGGGAGAATGCTCGCCGAAGAGACCCAAGGAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGCGAATATGCACATGGAGTGTTTGAATGTTGGCTTCACCCAGCTCAGTATCGAACTCGTCTTTGTAAGGATGGGACAAGTTGCAATAGACGGGTCTGTTTCTTTGCTCATACCAATGAGGAGCTAAGGCCATTGTATGTGTCTACTGGATCTGCCGTCCCTTCCCCACGATCAATTGGATCTGCCCCAACTGTAATGGACATGGCTACTGCATTGGGTCTTCTGCCCGGTTCCCCTTCATCAGTGTCAGCCTTATCTCCATCTCCATTTGCGCAGTCCATGTCTCCCTCCTCTAATGGCATTTCTCACGCTTCTATGAACTGGCAGCAACCGAATGTACCAACTCTTCATCTTCCAGGCAGTAACCTTCAATCTAGCCGGTTGAGGTCATCTCTTAATGCCAGGGATATGCCTTTGGAGGATTTGAATGTCTTACCAGACTTTGACAACCAGCCACGGATGTTAAATGATATGAACTGTTTCTCTCAGCCTCGTCCAAGTGCAGTGTCTGTGAGCCGATCTTGCTGGACCCAGACTCTAACTCCTAACAACCTTGAAGAGCTATTTTCTTCTGAGATCTCTTCGTCTCCCCGATTCTCTGATCCAGCCACCAACGTCTTTTCCCCTACACGCAAATCAACATTACTTAATCAATTCCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAGCATTATGTCTCCTAAGAATGTCGATCATCCTTTGTTGCAGGCCTCTTTTGGAGTTTCATCGCCAGGAAGGATGTCACCAAGAAGCACTGAGCCACCATCCCCAATGGGATCTAGGTTCTCCGCCTTTGTACAGCGTGAAAAGCAACAACATCTCCGCACCCTCAGCTCAAGGGAGCTTGGATCCAACGTCCTCAGCTCATTGATTGGATCTCCTGTTAGTTCTTTGCCTAAATGGGGATCCCCCAATGGGAAAGTGGATTGGTCGGTTGGTAAAAGTGAACTGGGTCAACTGCAAAGATCATCCTCTTTTGAGATCGGGAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAGTCCCCACCTGAGATGCTAAAAGAGAAGTTGGCAGCACCTGGGATGGGCGCTGCAGCATCCGGTGAGGACCTCAATACCACTAAATCACAATTAGAATCCTCTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG | 2181 | 46.26 | MCGGPEQSNSASTTSSASSPNPKDMNHLAVDCEDSFYSLLELASDNDVEGFKRLMDSDLLSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSFPEVDVNLSSGTDKSTALHCAASSGSVNAVDIVDMLLSAGADPSSKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNNHASNGSMDVSCLRLSIKTPDSESPSLSSSLEDEFPSPPKSMSSPKFTDGFANSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFAQSMSPSSNGISHASMNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRMLNDMNCFSQPRPSAVSVSRSCWTQTLTPNNLEELFSSEISSSPRFSDPATNVFSPTRKSTLLNQFQQQQNMLSPINTSIMSPKNVDHPLLQASFGVSSPGRMSPRSTEPPSPMGSRFSAFVQREKQQHLRTLSSRELGSNVLSSLIGSPVSSLPKWGSPNGKVDWSVGKSELGQLQRSSSFEIGNNGEEPDLSWVQSLVKESPPEMLKEKLAAPGMGAAASGEDLNTTKSQLESSDHSVIGAWLEQMQLDQLVV | 726 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6663184 | 6666313 | + | MC08g0817 | Mch8g0932 | 694553 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g0932 | 726 | MobiDBLite | consensus disorder prediction | 200 | 231 | - | - | |
Mch8g0932 | 726 | SMART | c3hfinal6 | 334 | 357 | IPR000571 | GO:0046872(InterPro) | |
Mch8g0932 | 726 | SMART | c3hfinal6 | 299 | 325 | IPR000571 | GO:0046872(InterPro) | |
Mch8g0932 | 726 | ProSiteProfiles | Ankyrin repeat region circular profile. | 116 | 150 | - | - | |
Mch8g0932 | 726 | FunFam | Zinc finger CCCH domain-containing protein 66 | 257 | 325 | - | - | |
Mch8g0932 | 726 | ProSiteProfiles | Ankyrin repeat profile. | 116 | 151 | IPR002110 | GO:0005515(InterPro) | |
Mch8g0932 | 726 | MobiDBLite | consensus disorder prediction | 567 | 586 | - | - | |
Mch8g0932 | 726 | ProSiteProfiles | Zinc finger C3H1-type profile. | 304 | 326 | IPR000571 | GO:0046872(InterPro) | |
Mch8g0932 | 726 | PANTHER | UNKEMPT FAMILY MEMBER | 71 | 675 | IPR045234 | - | |
Mch8g0932 | 726 | MobiDBLite | consensus disorder prediction | 568 | 585 | - | - | |
Mch8g0932 | 726 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Mch8g0932 | 726 | SUPERFAMILY | Ankyrin repeat | 36 | 160 | IPR036770 | - | |
Mch8g0932 | 726 | Gene3D | - | 34 | 183 | IPR036770 | - | |
Mch8g0932 | 726 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 303 | 324 | IPR000571 | GO:0046872(InterPro) | |
Mch8g0932 | 726 | Gene3D | - | 299 | 362 | - | - | |
Mch8g0932 | 726 | SMART | ANK_2a | 81 | 111 | IPR002110 | GO:0005515(InterPro) | |
Mch8g0932 | 726 | SMART | ANK_2a | 116 | 148 | IPR002110 | GO:0005515(InterPro) | |
Mch8g0932 | 726 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Mch8g0932 | 726 | Pfam | Ankyrin repeats (3 copies) | 73 | 150 | IPR002110 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g1393 | Mch-Chr5:14948843 | Mch8g0932 | Mch-Chr8:6663184 | 5.56e-310 | dispersed | |
Mch8g0932 | Mch-Chr8:6663184 | Mch8g3199 | Mch-Chr8:34150729 | 2.62E-56 | dispersed | |
Mch8g0932 | Mch-Chr8:6663184 | Mch9g1463 | Mch-Chr9:17005084 | 3.69E-142 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43832 | PF12796 | Ank_2 | 3.60E-10 | CL0465 | Mch | TF |
Pathway information
