Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0968 ATGGAGCTTGGTTTGAGATTAGGAGATGGTTCTCCATTTGGGTTCCCTAAGACTCAAAACAAGCACCCACCACACCCCACTGTATCCCGCAGAGGCCTCGATTTCTGCCTCGTCGACGCAAACGACGTCGTCGGCTGTTTTTTCGGCCCCCCGCCGCCGCCTCAGCTGGATCTTCTTCTTCCTCGTACTCCTCTCGCATCTCGCCCATCTTCTGAAACTGATGTTTCAGAAGCAGCGGCGGCGGAGGGCGGAGGAAACCCATTACTGTCGGCATCATTGGAGTACGGCGGTAGAGCGGCGGCGACACGGCCGGAAAACAGCAGCGGCGATGAAGAGGAAGAGGAGCAGAATTTGGGGTTGAGGAAGAAACTGCGGCTGTCGAGAGAACAGTCGGCGTTTCTTGAAGAAAGCTTCAAAGAACACCACTCGCTTTACCCTAAGCAAAAGGTAGAACTTGCAAAGAGACTGAACCTTCGTCCTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGGGCAAGAACTAAGCTGAAGCAAACGGAAGAGGAGTGTGAATACTTGAAGAAATGGTGCGAAACGCTGAGCCAACACAACACAAAGCTTCTGAAGGAACTCACAGATTTGAAAGCCTTGAAAACCACTGATTCTCTCTTCTTCCATTTGCCCCCCACCACTCTCACCATCTGCACGTCTTGTCAACGCGCCGCCGGAAAACACCTCGCCGACGAATCCCACGCCCACCGCACACAATAA 750 52.8 MELGLRLGDGSPFGFPKTQNKHPPHPTVSRRGLDFCLVDANDVVGCFFGPPPPPQLDLLLPRTPLASRPSSETDVSEAAAAEGGGNPLLSASLEYGGRAAATRPENSSGDEEEEEQNLGLRKKLRLSREQSAFLEESFKEHHSLYPKQKVELAKRLNLRPRQVEVWFQNRRARTKLKQTEEECEYLKKWCETLSQHNTKLLKELTDLKALKTTDSLFFHLPPTTLTICTSCQRAAGKHLADESHAHRTQ 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6886615 6889912 - MC08g0851 Mch8g0968 694589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0968 249 MobiDBLite consensus disorder prediction 60 121 - -
Mch8g0968 249 Pfam Homeodomain 121 175 IPR001356 GO:0003677(InterPro)
Mch8g0968 249 CDD homeodomain 121 178 IPR001356 GO:0003677(InterPro)
Mch8g0968 249 ProSitePatterns 'Homeobox' domain signature. 152 175 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch8g0968 249 SMART HOX_1 119 181 IPR001356 GO:0003677(InterPro)
Mch8g0968 249 ProSiteProfiles 'Homeobox' domain profile. 117 177 IPR001356 GO:0003677(InterPro)
Mch8g0968 249 SUPERFAMILY Homeodomain-like 115 178 IPR009057 -
Mch8g0968 249 MobiDBLite consensus disorder prediction 1 27 - -
Mch8g0968 249 Gene3D - 125 175 - -
Mch8g0968 249 Pfam Homeobox associated leucine zipper 177 211 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g0968 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 34 238 IPR050762 -
Mch8g0968 249 SMART halz 177 220 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1450 Mch-Chr5:15582998 Mch8g0968 Mch-Chr8:6886615 1.49E-45 dispersed
Mch8g0968 Mch-Chr8:6886615 Mch9g1254 Mch-Chr9:14358901 1.48E-32 dispersed
Mch8g0968 Mch-Chr8:6886615 Mch9g0512 Mch-Chr9:3807043 4.71E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43835 PF00046 Homeodomain 3.90E-15 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0968 K09338 - csv:101208907 214.927