Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0984 ATGGCAGGTTTGGCTCCAGAAGGATCACAATTTGATGCTCGTCAGTATGACTCAAAAATGAATGAGTTGCTTTCATCTGATGGACAGGATTTCTTCACCTCATATGATGAAGTCTATGATAGTTTCGATTCTATGGGCCTTCAAGAGAACCTTCTAAGAGGCATCTATGCTTATGGTTTCGAGAAGCCATCGGCAATCCAGCAGAGAGGAATTGTTCCTTTCTGCAAAGGGCTTGATGTGATCCAACAAGCGCAGTCTGGAACAGGGAAGACTGCAACCTTTTGCTCTGGCATTCTGCAGCAACTTGATTATGGTCTTGTGCAGTGTCAGGCTTTGGTGTTAGCACCCACTAGGGAACTTGCTCAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTTAAGGTTCATGCATGTGTTGGTGGGACAAGTGTTCGTGAGGACCAGCGCATTCTCCAAGCTGGTGTCCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAGTCACTTCGTCCTGACTATATTCGGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTCAAGGATCAGATTTATGACATTTTCCAGCTGCTGCCGTCCAAGATTCAGGTTGGTGTTTTCTCTGCTACAATGCCACCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTGAGGATTCTGGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTTTATGTCAATGTTGACAAGGAAGACTGGAAGCTTGAGACTCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTCATCTTTGTGAATACCCGACGCAAAGTTGATTGGCTCACTGATAAGATGCGAGGCCGTGATCACACAGTGTCTGCTACCCATGGTGACATGGACCAGAACACTCGAGACATCATTATGCGAGAGTTCCGTTCAGGCTCATCTAGAGTTCTCATTACCACCGATCTATTGGCCCGTGGTATAGATGTCCAGCAGGTATCACTTGTTATTAACTATGATCTGCCGACACAACCAGAGAATTACCTTCATCGTATTGGACGAAGTGGACGGTTTGGAAGAAAAGGTGTTGCGATCAACTTCGTAACTACTGAGGATGAAAGAATGCTATTTGACATCCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCGGCTAATGTTGCTGATCTCCTGTGA 1242 45.57 MAGLAPEGSQFDARQYDSKMNELLSSDGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7012121 7016214 - MC08g0866 Mch8g0984 694605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0984 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Mch8g0984 413 SMART helicmild6 293 374 IPR001650 -
Mch8g0984 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Mch8g0984 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Mch8g0984 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Mch8g0984 413 Gene3D - 249 413 IPR027417 -
Mch8g0984 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Mch8g0984 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Mch8g0984 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Mch8g0984 413 CDD SF2_C_DEAD 253 383 - -
Mch8g0984 413 SMART ultradead3 59 256 IPR014001 -
Mch8g0984 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Mch8g0984 413 Gene3D - 30 248 IPR027417 -
Mch8g0984 413 CDD DEADc_EIF4A 45 242 - -
Mch8g0984 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Mch8g0984 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0455 Mch-Chr8:3237491 Mch8g0984 Mch-Chr8:7012121 1.14E-73 dispersed
Mch8g0560 Mch-Chr8:4021250 Mch8g0984 Mch-Chr8:7012121 1.87E-64 dispersed
Mch8g0984 Mch-Chr8:7012121 Mch8g2083 Mch-Chr8:23828482 3.02E-172 dispersed
Mch8g0984 Mch-Chr8:7012121 Mch9g0240 Mch-Chr9:1818171 2.42E-296 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0984 K03257 - csv:101223055 815.839