Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0985 ATGGGAAACCAGAAGCAGAAGTGGACGTCGGAGGAGGAAGAAGCACTCTTGGCCGGTGTAGCGAAGCACGGCCCCGGCAAGTGGAAAAATATTCTCAAAGATCCTGAATTCGCTCCCTTCCTTACTCACCGCTCCAACATTGACCTAAAGGACAAATGGCGTAATTTGAGTGTCAGCACTGCTTCACAAGGCTCGAAAGAGAAGTCTAGGGCTCCTAAAGCAAAAGCTATCGTCGCCGCTTCACTTTCTAACAACCAAAACTCTGTTCCTGCTAGGTTGAATGCATCTGCTGATACTGCAGGGGAAGAACCACCAAACACGAATGCACAGGATGGAAAAAATGCCCCAAGGTACAATGCAATGATTTTTGAAGCCCTTTCAACCATAAAAGATTCAAATGGATGTGACATAGGTACAATAGTTAACTTTATCGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCTATTGAGCTCAAGGTTGAGGAGACTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAAAATTGCTATAAGGTAAGAAAAGACAACTCATTGGCAGTCAAAACTCCTACACCCAAACAAAAAGATGTCAGGCCACGGATACCGCAATATATGGGAGGTTTGATGCCATCAGGAGAGACAGTGGAAGATGCGGCGAGAGCTGCTGCCTACAAAGTTGCGGATGCAGAGAACAAATCTTTCTTAGCAGCTGAAGCTGTCAAGGAGGCAGAGAGAGTCGCGAAGATGGCTGAAGATACGGATTCAATGCTACAGATGATAAGGGATGTGTACGAACAATGTTCTCGTGGGGAGATTATTCTCTTGGCTTAG 834 45.68 MGNQKQKWTSEEEEALLAGVAKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAPKAKAIVAASLSNNQNSVPARLNASADTAGEEPPNTNAQDGKNAPRYNAMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRLLSSRLRRLVSQGKLEKVQNCYKVRKDNSLAVKTPTPKQKDVRPRIPQYMGGLMPSGETVEDAARAAAYKVADAENKSFLAAEAVKEAERVAKMAEDTDSMLQMIRDVYEQCSRGEIILLA 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7018546 7022743 - MC08g0867 Mch8g0985 694606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0985 277 Gene3D - 8 86 - -
Mch8g0985 277 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch8g0985 277 SMART h15plus2 112 177 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch8g0985 277 SMART sant 4 59 IPR001005 -
Mch8g0985 277 FunFam Telomere repeat-binding factor 1 2 58 - -
Mch8g0985 277 MobiDBLite consensus disorder prediction 95 114 - -
Mch8g0985 277 CDD SANT_TRF 6 56 - -
Mch8g0985 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Mch8g0985 277 PANTHER SINGLE MYB HISTONE 4 1 274 IPR044597 GO:0003691(InterPro)
Mch8g0985 277 SUPERFAMILY Winged helix DNA-binding domain 111 193 IPR036390 -
Mch8g0985 277 FunFam Telomere repeat-binding factor 1 8 87 - -
Mch8g0985 277 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch8g0985 277 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mch8g0985 277 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Mch8g0985 277 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Mch8g0985 277 Gene3D - 111 198 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0985 K09422 - - csv:101202785 455.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1294 Mch-Chr1:15082711 Mch8g0985 Mch-Chr8:7018546 3.26E-39 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g0420 . 1 313 Single Myb Histone (SMH) Gene Family AT1G49950 60.8 2.8e-73 272.3
Mch1g1294 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 53.9 2.0e-63 239.6
Mch1g1294 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 53.6 1.5e-66 250.0
Mch1g1294 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 51.0 4.3e-58 221.9
Mch8g0985 . 1 276 Single Myb Histone (SMH) Gene Family AT1G17520 51.9 8.2e-70 260.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013733 1 1 1 0 1 0 2 0 0 0 0 0 1 1 1 2 0 2 1 0 0 0 1 1 1 0 1 4 2 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43837 PF00538 Linker_histone 1.90E-10 CL0123 Mch TF