Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0985 ATGGGAAACCAGAAGCAGAAGTGGACGTCGGAGGAGGAAGAAGCACTCTTGGCCGGTGTAGCGAAGCACGGCCCCGGCAAGTGGAAAAATATTCTCAAAGATCCTGAATTCGCTCCCTTCCTTACTCACCGCTCCAACATTGACCTAAAGGACAAATGGCGTAATTTGAGTGTCAGCACTGCTTCACAAGGCTCGAAAGAGAAGTCTAGGGCTCCTAAAGCAAAAGCTATCGTCGCCGCTTCACTTTCTAACAACCAAAACTCTGTTCCTGCTAGGTTGAATGCATCTGCTGATACTGCAGGGGAAGAACCACCAAACACGAATGCACAGGATGGAAAAAATGCCCCAAGGTACAATGCAATGATTTTTGAAGCCCTTTCAACCATAAAAGATTCAAATGGATGTGACATAGGTACAATAGTTAACTTTATCGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCTATTGAGCTCAAGGTTGAGGAGACTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAAAATTGCTATAAGGTAAGAAAAGACAACTCATTGGCAGTCAAAACTCCTACACCCAAACAAAAAGATGTCAGGCCACGGATACCGCAATATATGGGAGGTTTGATGCCATCAGGAGAGACAGTGGAAGATGCGGCGAGAGCTGCTGCCTACAAAGTTGCGGATGCAGAGAACAAATCTTTCTTAGCAGCTGAAGCTGTCAAGGAGGCAGAGAGAGTCGCGAAGATGGCTGAAGATACGGATTCAATGCTACAGATGATAAGGGATGTGTACGAACAATGTTCTCGTGGGGAGATTATTCTCTTGGCTTAG 834 45.68 MGNQKQKWTSEEEEALLAGVAKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAPKAKAIVAASLSNNQNSVPARLNASADTAGEEPPNTNAQDGKNAPRYNAMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRLLSSRLRRLVSQGKLEKVQNCYKVRKDNSLAVKTPTPKQKDVRPRIPQYMGGLMPSGETVEDAARAAAYKVADAENKSFLAAEAVKEAERVAKMAEDTDSMLQMIRDVYEQCSRGEIILLA 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7018546 7022743 - MC08g0867 Mch8g0985 694606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0985 277 Gene3D - 8 86 - -
Mch8g0985 277 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch8g0985 277 SMART h15plus2 112 177 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch8g0985 277 SMART sant 4 59 IPR001005 -
Mch8g0985 277 FunFam Telomere repeat-binding factor 1 2 58 - -
Mch8g0985 277 MobiDBLite consensus disorder prediction 95 114 - -
Mch8g0985 277 CDD SANT_TRF 6 56 - -
Mch8g0985 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Mch8g0985 277 PANTHER SINGLE MYB HISTONE 4 1 274 IPR044597 GO:0003691(InterPro)
Mch8g0985 277 SUPERFAMILY Winged helix DNA-binding domain 111 193 IPR036390 -
Mch8g0985 277 FunFam Telomere repeat-binding factor 1 8 87 - -
Mch8g0985 277 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Mch8g0985 277 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mch8g0985 277 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Mch8g0985 277 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Mch8g0985 277 Gene3D - 111 198 IPR036388 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1294 Mch-Chr1:15082711 Mch8g0985 Mch-Chr8:7018546 3.26E-39 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43837 PF00538 Linker_histone 1.90E-10 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0985 K09422 - csv:101202785 455.677