Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1003 ATGATGCTTCATTCCGTAGGACCTGCGAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGATGTTGCTGAGGATAGATTGAAATATCCCTTTCCAGAATTAGTTTCTTCCGGCCGATTGGAGGTCCGAGTTCTGACAAATCCAAGCAAGGATGAATTCACTAGAATTGTAGAATCATGTCAACCGAGCTTCGTCTACTTGCAAGGGGAACAGCTCGAAAATGATGAAATTGGTTCTTTAGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCCATACTGCACTACCAATCACCGTGTATTTAGAAATCCCCAATGGAGGCAGAACAGCAGAGGCTCTTCATTCTAAGGGAATTCCTTATGTCATGTATTGGAACAACACATTGTCATGTTATGCCGCAGCTCATTTTCGTAATGGATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGCGCGGAGCAATTATGCCCTTCCCGGGGATGATGACATTATTAGCTGTAATCTAGAGCCACAACTTATTGGGGAACCTTTAAAGATTAGCGTAGAGCCCCCCGAGATAGATGCAGGAGATGCAGGTGAAGATGAAGACGATTCTTTAGGAACCCTTCCTGCCATAAGTATACATGATAATAATGTGACCATGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATGCGTGCTTATTGAGATCGTTGGAGGATGGACTGAATGCCCTTTTGAACATTGAAATACGTGGGAGCAAACTTCAGGGGAAGTTTAGGTATGCTTCTTCTTGGGAACTTATTGCTTCTCCACCGCCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTTGTGACAATGCGATGTGATATGGTGACCTGTAGTTCAGCCCACATCGCAATATTAGTGTCGGGTAGTGCTCATACTTGTTTTGATGATCAGCTGTTGGAAAAACATATCAAACATGAGATTATTGAAAATAGCCAATTAGTTCATGCCCTGCGTGATTGTGAGGGCAACCAACATTGCATGCACGAGCCCCGAAAATCTGCTTCAGTTGCTTGTGGAGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCGTATCGGAGTTTGGTTGCACTCGGCATTGGGGGAGTTCAGGGTTTGCCTGTGGCTTCTTTCGAGAAAGAGGATGCTGAGCGGTTTCTCTTCTTCTGTTCAAGGGATGGGAATGATAAACATTCAGATCAGTTATTTTTAAGTGTATTGCCTAGCTGGTTCAAACCACCTATTCCTAGTAGAAAGAGAGTGGAACCAAGCCAGGGAATAAGCACTGTTTCACATGACAGTCTTGCATATGCAAATATCCCTTCCATTAGAAGAGTAGGTGGAGAGGAGCGTGCACCAATGAATGGGTTTAAGGCAACCTTACTCCCAGCTAGAAAAAGATTAAAAGTAGCCACCATGAGGCCTATTCCACGTGTGCATCGGAATAAAATGACACCCTTCTCTGGATTAACTGAAGCAGATGGGAACAATGGATACTTACCCAAGGCTAGTCTGCCCGTCGTTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAACGAAAATCTTTTTCAAGCTCGTCTCAGTCTAAGCAGATTATTTCCTTAAATCCACTACCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCAATATTGCTCAGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTCGAGGACATTCTCGACTTATTCCTCAAGGTGGACTTTCTGAGTTCCCAGATGCCATACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTACGAGACTTACCTTCTAGAATATGAACTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTCGGGTGCGACCGAAGGCAGGGTCTCGGAGCATTCAAGGATTATGCCAAAACGGATGGGCTAGAGTACGTTTGTCCACATTGTAGCATCACAACCTACAAGAAGAAACCATACAGAGTAGCGAACGGGTCTCCACAAGGAATAACGAATCCACGGATACCCTGA 2379 44.43 MMLHSVGPARQTCSLLAVTCGSVPKVKCEEDVAEDRLKYPFPELVSSGRLEVRVLTNPSKDEFTRIVESCQPSFVYLQGEQLENDEIGSLVWNGVDLSLEDLCGLFHTALPITVYLEIPNGGRTAEALHSKGIPYVMYWNNTLSCYAAAHFRNGLLSVVQSSSTHTWDAFQLAHAAFRLHCARSNYALPGDDDIISCNLEPQLIGEPLKISVEPPEIDAGDAGEDEDDSLGTLPAISIHDNNVTMRFLICGVPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFRYASSWELIASPPPLQAGSFSRGVVTMRCDMVTCSSAHIAILVSGSAHTCFDDQLLEKHIKHEIIENSQLVHALRDCEGNQHCMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERFLFFCSRDGNDKHSDQLFLSVLPSWFKPPIPSRKRVEPSQGISTVSHDSLAYANIPSIRRVGGEERAPMNGFKATLLPARKRLKVATMRPIPRVHRNKMTPFSGLTEADGNNGYLPKASLPVVTPSKHVTVGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQYCSEEEFLKDVMEFLLLRGHSRLIPQGGLSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPYRVANGSPQGITNPRIP 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7123015 7130301 - MC08g0881 Mch8g1003 694624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1003 792 SUPERFAMILY ARID-like 606 720 IPR036431 GO:0003677(InterPro)
Mch8g1003 792 SUPERFAMILY FYVE/PHD zinc finger 701 769 IPR011011 -
Mch8g1003 792 SMART ARID_2 602 705 - -
Mch8g1003 792 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 787 IPR042293 -
Mch8g1003 792 CDD ARID 607 705 - -
Mch8g1003 792 Pfam ARID/BRIGHT DNA binding domain 608 705 IPR001606 GO:0003677(InterPro)
Mch8g1003 792 ProSiteProfiles ARID domain profile. 605 709 IPR001606 GO:0003677(InterPro)
Mch8g1003 792 CDD PHD_ARID4_like 715 766 - -
Mch8g1003 792 Gene3D - 599 715 IPR036431 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1003 Mch-Chr8:7123015 Mch9g0178 Mch-Chr9:1337873 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43839 PF01388 ARID 7.50E-14 CL0123 Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1003 - - - 0.0