Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1003 ATGATGCTTCATTCCGTAGGACCTGCGAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGATGTTGCTGAGGATAGATTGAAATATCCCTTTCCAGAATTAGTTTCTTCCGGCCGATTGGAGGTCCGAGTTCTGACAAATCCAAGCAAGGATGAATTCACTAGAATTGTAGAATCATGTCAACCGAGCTTCGTCTACTTGCAAGGGGAACAGCTCGAAAATGATGAAATTGGTTCTTTAGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCCATACTGCACTACCAATCACCGTGTATTTAGAAATCCCCAATGGAGGCAGAACAGCAGAGGCTCTTCATTCTAAGGGAATTCCTTATGTCATGTATTGGAACAACACATTGTCATGTTATGCCGCAGCTCATTTTCGTAATGGATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGCGCGGAGCAATTATGCCCTTCCCGGGGATGATGACATTATTAGCTGTAATCTAGAGCCACAACTTATTGGGGAACCTTTAAAGATTAGCGTAGAGCCCCCCGAGATAGATGCAGGAGATGCAGGTGAAGATGAAGACGATTCTTTAGGAACCCTTCCTGCCATAAGTATACATGATAATAATGTGACCATGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATGCGTGCTTATTGAGATCGTTGGAGGATGGACTGAATGCCCTTTTGAACATTGAAATACGTGGGAGCAAACTTCAGGGGAAGTTTAGGTATGCTTCTTCTTGGGAACTTATTGCTTCTCCACCGCCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTTGTGACAATGCGATGTGATATGGTGACCTGTAGTTCAGCCCACATCGCAATATTAGTGTCGGGTAGTGCTCATACTTGTTTTGATGATCAGCTGTTGGAAAAACATATCAAACATGAGATTATTGAAAATAGCCAATTAGTTCATGCCCTGCGTGATTGTGAGGGCAACCAACATTGCATGCACGAGCCCCGAAAATCTGCTTCAGTTGCTTGTGGAGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCGTATCGGAGTTTGGTTGCACTCGGCATTGGGGGAGTTCAGGGTTTGCCTGTGGCTTCTTTCGAGAAAGAGGATGCTGAGCGGTTTCTCTTCTTCTGTTCAAGGGATGGGAATGATAAACATTCAGATCAGTTATTTTTAAGTGTATTGCCTAGCTGGTTCAAACCACCTATTCCTAGTAGAAAGAGAGTGGAACCAAGCCAGGGAATAAGCACTGTTTCACATGACAGTCTTGCATATGCAAATATCCCTTCCATTAGAAGAGTAGGTGGAGAGGAGCGTGCACCAATGAATGGGTTTAAGGCAACCTTACTCCCAGCTAGAAAAAGATTAAAAGTAGCCACCATGAGGCCTATTCCACGTGTGCATCGGAATAAAATGACACCCTTCTCTGGATTAACTGAAGCAGATGGGAACAATGGATACTTACCCAAGGCTAGTCTGCCCGTCGTTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAACGAAAATCTTTTTCAAGCTCGTCTCAGTCTAAGCAGATTATTTCCTTAAATCCACTACCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCAATATTGCTCAGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTCGAGGACATTCTCGACTTATTCCTCAAGGTGGACTTTCTGAGTTCCCAGATGCCATACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTACGAGACTTACCTTCTAGAATATGAACTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTCGGGTGCGACCGAAGGCAGGGTCTCGGAGCATTCAAGGATTATGCCAAAACGGATGGGCTAGAGTACGTTTGTCCACATTGTAGCATCACAACCTACAAGAAGAAACCATACAGAGTAGCGAACGGGTCTCCACAAGGAATAACGAATCCACGGATACCCTGA 2379 44.43 MMLHSVGPARQTCSLLAVTCGSVPKVKCEEDVAEDRLKYPFPELVSSGRLEVRVLTNPSKDEFTRIVESCQPSFVYLQGEQLENDEIGSLVWNGVDLSLEDLCGLFHTALPITVYLEIPNGGRTAEALHSKGIPYVMYWNNTLSCYAAAHFRNGLLSVVQSSSTHTWDAFQLAHAAFRLHCARSNYALPGDDDIISCNLEPQLIGEPLKISVEPPEIDAGDAGEDEDDSLGTLPAISIHDNNVTMRFLICGVPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFRYASSWELIASPPPLQAGSFSRGVVTMRCDMVTCSSAHIAILVSGSAHTCFDDQLLEKHIKHEIIENSQLVHALRDCEGNQHCMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERFLFFCSRDGNDKHSDQLFLSVLPSWFKPPIPSRKRVEPSQGISTVSHDSLAYANIPSIRRVGGEERAPMNGFKATLLPARKRLKVATMRPIPRVHRNKMTPFSGLTEADGNNGYLPKASLPVVTPSKHVTVGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQYCSEEEFLKDVMEFLLLRGHSRLIPQGGLSEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPYRVANGSPQGITNPRIP 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7123015 7130301 - MC08g0881 Mch8g1003 694624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1003 792 SUPERFAMILY ARID-like 606 720 IPR036431 GO:0003677(InterPro)
Mch8g1003 792 SUPERFAMILY FYVE/PHD zinc finger 701 769 IPR011011 -
Mch8g1003 792 SMART ARID_2 602 705 - -
Mch8g1003 792 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 787 IPR042293 -
Mch8g1003 792 CDD ARID 607 705 - -
Mch8g1003 792 Pfam ARID/BRIGHT DNA binding domain 608 705 IPR001606 GO:0003677(InterPro)
Mch8g1003 792 ProSiteProfiles ARID domain profile. 605 709 IPR001606 GO:0003677(InterPro)
Mch8g1003 792 CDD PHD_ARID4_like 715 766 - -
Mch8g1003 792 Gene3D - 599 715 IPR036431 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1003 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1003 Mch-Chr8:7123015 Mch9g0178 Mch-Chr9:1337873 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch7g0866 . 115 457 ARID Transcription Factor Family AT1G04880 60.7 1.3e-109 393.7
Mch10g1836 . 200 479 ARID Transcription Factor Family AT1G20910 60.1 3.0e-91 332.4
Mch11g0083 . 16 309 ARID Transcription Factor Family AT1G76110 67.9 3.5e-112 401.7
Mch10g1836 . 188 509 ARID Transcription Factor Family AT1G76510 60.8 7.1e-110 394.4
Mch8g1003 . 2 781 ARID Transcription Factor Family AT3G43240 58.0 7.1e-259 890.2
Mch9g0178 . 2 771 ARID Transcription Factor Family AT3G43240 57.9 1.2e-258 889.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43839 PF01388 ARID 7.50E-14 CL0123 Mch TR