Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1006 ATGGATTCCGTCCAGTCCTTCAAGGGCTACGGCAAGGTCGACGAGCTCGAGCATCAAGCCTTCCGTCGGAAAACGCGCCGCCGACTCATCATTCTTCTTCTCTCCATCGTTCTCCTAATCGCCGTTGTCATCGGTGCCGTCGCCGGCATTCTAATCCGTAACCGGAACTCCTCCTCCTCCCCGCCCACCACCGCCGGTCCTCCCACAGAGCTCACTCCCGTCGCCTCGCTCAAAAGTCTCTGCAGCGTCACTCAGTATCCCAGCTCCTGCCTCTCCTCTCTCGCAAACTCCAACACCACCGATCCCGAGATTCTGTTCAAGCTTTCTCTCCGCGTCGCCTCCGATGCGCTCTCCAAACTCGCCGATTACTCCTCCACCCTCGCTTCCACTACCGATGACCCGAAAATCAGAGACGCAATCGGAATCTGCCGGAGCGTTTTCGAAGACGCCATTGACACTCTGAACGACACCGTTTCGTCCATGGAAGTGGATCGCCGTGGCCAGAAGTTCTTGTCGCCGTCGAGGATTGAAGATCTGAGAACCTGGCTCAGCACCGCCATCACCGACCAGGAGACCTGCCTCGACGCCGTCCGAGATCTCAACCGGACGGCGGTTCTAGAAGATTTACAAGCAGCAATGGGGAACTCTACCGAATTCGCCAGCAATAGCTTAGCGATTGTGACTAAAATTCTGGCCGTGTTGGCCAATTTCAACATCCCAATCCACCGGAAGCTGATGGGGTTCCCGGAGTGGGTGAGCCCCGGCGACCGGAGGCTTCTGGAGGAGAACAATGTGACGACGCACGTGACGGTGTCGAAAGATGGGAAAGGGGACTTCTCGACGATCAAAGAGGCCGTAGCGGCGGTGCCAAAGAAGAGCAAAGAAAGATTCGTCATATATGTAAAAGAGGGAGTATACGAAGAGAATGTGATTCTGGATAAGAGCAAGTGGAATGTTATGATGTATGGAGATGGCAGAACCAAAACCATTGTTTCCGGCCGCCTGAACTTCATCGACGGCACTCCCACCTTCTCCACCGCCACTTTTGCTGTGGCTGGCAAAGGGTTCATTGGTAAGGACATGGGGTTCGTTAACACCGCCGGTCCGGCGAAGCACCAGGCCGTCGCCTTCCGGTCAGGCTCCGATCTCTCTGTAATGTACGGCTGTTCTTTTGATGGCTATCAAGACACTCTCTACACCCACTCAAACCGTCAATTCTACCGCGACTGCGACATCAGTGGCACCATCGACTTCATCTTCGGCAACGCGGCGGTGGTGTTCCAGAACTGCAACATCCGGCCAAGGCAGCCGCTCCCCAACCAGTTCAACACCATCACGGCCCAAGGCAAAAAGGACATCAACCAGAACTCCGGCATTTCCATTCAGAAATGCACTTTCGCTGCCTACAACGACAGTCTCAGCGCCCCCACTTACTTGGGGCGGCCATGGAAGGAGTTCTCCACCACCGTGATTATGCAGTCCGGGATCGGTGGGTTCCTCCAGCCGGTCGGGTGGAAGGAATGGGTCAGCGGGCAGGACCCACCCAGCACCATATTTTACGGCGAGTATCAAAACAGTGGGCCGGGAGCGAACGTGGAGAAGAGGGTTAAATGGGCCGGTTACAGGCCCAGTCTTACCGACGTCGAGGCCGGAAAGTTCACCGTTGGGTCCTTCCTCCACGGCGAGGATTGGTTGCCGGCGGCCAGTGTAAAATTTGATACATCCTTGTGA 1731 55.98 MDSVQSFKGYGKVDELEHQAFRRKTRRRLIILLLSIVLLIAVVIGAVAGILIRNRNSSSSPPTTAGPPTELTPVASLKSLCSVTQYPSSCLSSLANSNTTDPEILFKLSLRVASDALSKLADYSSTLASTTDDPKIRDAIGICRSVFEDAIDTLNDTVSSMEVDRRGQKFLSPSRIEDLRTWLSTAITDQETCLDAVRDLNRTAVLEDLQAAMGNSTEFASNSLAIVTKILAVLANFNIPIHRKLMGFPEWVSPGDRRLLEENNVTTHVTVSKDGKGDFSTIKEAVAAVPKKSKERFVIYVKEGVYEENVILDKSKWNVMMYGDGRTKTIVSGRLNFIDGTPTFSTATFAVAGKGFIGKDMGFVNTAGPAKHQAVAFRSGSDLSVMYGCSFDGYQDTLYTHSNRQFYRDCDISGTIDFIFGNAAVVFQNCNIRPRQPLPNQFNTITAQGKKDINQNSGISIQKCTFAAYNDSLSAPTYLGRPWKEFSTTVIMQSGIGGFLQPVGWKEWVSGQDPPSTIFYGEYQNSGPGANVEKRVKWAGYRPSLTDVEAGKFTVGSFLHGEDWLPAASVKFDTSL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7149800 7153104 - MC08g0884 Mch8g1006 694627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1006 576 NCBIfam pectinesterase inhibitor domain 66 230 IPR006501 GO:0004857(InterPro)
Mch8g1006 576 FunFam Pectinesterase 73 231 - -
Mch8g1006 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 231 IPR035513 -
Mch8g1006 576 Pfam Pectinesterase 268 561 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch8g1006 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 230 IPR035513 -
Mch8g1006 576 PANTHER PECTINESTERASE 29 567 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch8g1006 576 SMART PMEI_2 72 226 IPR006501 GO:0004857(InterPro)
Mch8g1006 576 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Mch8g1006 576 FunFam Pectinesterase 262 576 - -
Mch8g1006 576 Pfam Plant invertase/pectin methylesterase inhibitor 76 226 IPR006501 GO:0004857(InterPro)
Mch8g1006 576 SUPERFAMILY Pectin lyase-like 267 572 IPR011050 -
Mch8g1006 576 CDD PMEI-like_3 79 230 - -
Mch8g1006 576 Gene3D - 262 576 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g1197 Mch-Chr7:15639105 Mch8g1006 Mch-Chr8:7149800 5.60E-135 dispersed
Mch7g1198 Mch-Chr7:15643425 Mch8g1006 Mch-Chr8:7149800 1.01E-137 dispersed
Mch8g1006 Mch-Chr8:7149800 Mch9g0697 Mch-Chr9:5247033 3.63E-124 dispersed
Mch8g1006 Mch-Chr8:7149800 Mch8g1007 Mch-Chr8:7154372 8.95E-129 tandem
Mch3g0932 Mch-Chr3:13211601 Mch8g1006 Mch-Chr8:7149800 8.01E-152 transposed
Mch3g1758 Mch-Chr3:18889882 Mch8g1006 Mch-Chr8:7149800 1.19E-32 transposed
Mch5g0733 Mch-Chr5:4939153 Mch8g1006 Mch-Chr8:7149800 3.99E-130 wgd
Mch8g1006 Mch-Chr8:7149800 Mch9g0172 Mch-Chr9:1300301 5.37E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1006 - - - 0.0