Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1007 ATGGCGTTATTAACCCACCAATCCTCTCGCCAAACTTCCTCACCACACATCTCACCCTCCCACAGACCGATGGCACACACCGACGCCGGAGTTTCTATCTCCGGCAAGAAAACAAAGAAGCTCTTCCTCTTAGCTCTCTCCGCCACGCTTCTCCTGGCCGCCGTCATCGGCATTGTCGCCGGAGTACTCAATGCCAGCCATAAGGAGAATGCCGAGCAGGCGGCGGTGGTGAGAAACTCGTGCGCCGTGACTCTGTATCCCGAACTCTGCCACTCGACGATTTCCTCAGCCGTGGCAAAAACTCCGGCGAAGGTTTCAAGCCCCAAAGACGTAATCCAAGTGTCGCTGAACATCACAATCAGCGCCGTGAAGCATAACTACAACAGCATCAAGAAGCTCACGAAGCTGAGGAATCTTTCCAAGCGAGAGAAGATGGCTCTCCACGACTGCCTCGAGACCGCCGACGAGACGCTGAACGAGCTCTATGAGGTCGTCGATAATCTCCACGACTACCCCAAGAAGAAATCTCTGTCCAAACACGCCGACGACCTCAAAACTTTGCTCAGTTCCGCCATCACTAATCAGGAGACTTGTCTGGACGGATTCTCACACGACAAAGCCGACAAGAGGGTGAGAAAGTCGTTAGAAGCAGGGCAGGTTCACGTCGAGAAGTTGTGCAGCATTGCATTGGCGCTGATCAAGAATCTCACCGACACCGACATTGCAAATCACAACATCAACAGGAAGCAGCTCATGGAGGACAACGTCGACGGCGATGCAATTAATTGGCCGGATTGGATGTCCGCCGCTGACAGGAGGCTCTTGCAGGCCTCGTGGTCGGCGACGCCGGACGCGGTGGTGGCAGCCGATGGGAGTGGGGATTTCCGGACGGTATCGGCGGCGGTTGCGGCTGCGCCGGCCAAGAGTAGTCGGAGATATATAATAAGGATCAAGGCGGGGGTATATAGGGAAAATGTGAATGTGCCGAGTAACAAGAGGAATATAATGTTTTGGGGAGATGGAAGAACCACCACCATTATCACCGGAAACAGAAATGTCGTCGACGGCAGCACCACCTTCAACTCCGCCACCGTTGCGGCGGTGGGAGGAGGGTTCTTGGCGAGAGACATTACCTTCCAGAACACTGCCGGACCGTCGAAGCACCAAGCGGTGGCTCTTCGCGTCGGCTCTGATCTCTCCGCCTTTTACCGCTGCGACATGCTCGCCTACCAAGACACTCTCTACGTCCACTCCAATCGCCAATTTTACGTCAAATGTATCATCGTCGGCACCATCGACTTCATCTTCGGCAACGCCGCCGCAGTCATACAAGATTGCGATATCCACGCTCGCCGCCCGAACCCCGGCCAGAAGAACATGGTAACAGCGCAGGGAAGGACCGATCCCAATCAGAACACTGGAATCGTGATCCAGAAATGCCGAATCGGAACCACCTCCGATCTGCAGCCGGTGATCAAGAGTTTTCCGACGTTTCTCGGCCGGCCGTGGCAGAGGTACTCGAGGACCGTGGTTATGCAGACGAGCATCAGCAATGTGATAGATCCGGCGGGATGGCACGTGTGGGACGGCAATTTTGCCCTCGATACTCTGTTCTACGCAGAGTATCAGAACAGTGGGCCCGGCGCCGACACGTCGAAGAGAGTGAAATGGAAGGGGTACAAGATCATCACCAGTGCGGCGGAAGCTCAGGCCTTCACCGCCGGAAGGTTCATTGGCGGCGGTTCTTGGCTGTCCTCCACCGGGTTCCCATTTTCGCTTGGGCTGTAA 1788 55.54 MALLTHQSSRQTSSPHISPSHRPMAHTDAGVSISGKKTKKLFLLALSATLLLAAVIGIVAGVLNASHKENAEQAAVVRNSCAVTLYPELCHSTISSAVAKTPAKVSSPKDVIQVSLNITISAVKHNYNSIKKLTKLRNLSKREKMALHDCLETADETLNELYEVVDNLHDYPKKKSLSKHADDLKTLLSSAITNQETCLDGFSHDKADKRVRKSLEAGQVHVEKLCSIALALIKNLTDTDIANHNINRKQLMEDNVDGDAINWPDWMSAADRRLLQASWSATPDAVVAADGSGDFRTVSAAVAAAPAKSSRRYIIRIKAGVYRENVNVPSNKRNIMFWGDGRTTTIITGNRNVVDGSTTFNSATVAAVGGGFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVKCIIVGTIDFIFGNAAAVIQDCDIHARRPNPGQKNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLQPVIKSFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHVWDGNFALDTLFYAEYQNSGPGADTSKRVKWKGYKIITSAAEAQAFTAGRFIGGGSWLSSTGFPFSLGL 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7154372 7158297 - MC08g0885 Mch8g1007 694628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1007 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 237 IPR035513 -
Mch8g1007 595 FunFam Pectinesterase 73 237 - -
Mch8g1007 595 SUPERFAMILY Pectin lyase-like 281 594 IPR011050 -
Mch8g1007 595 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Mch8g1007 595 SMART PMEI_2 72 232 IPR006501 GO:0004857(InterPro)
Mch8g1007 595 CDD PMEI-like_3 80 237 - -
Mch8g1007 595 Gene3D - 279 595 IPR012334 -
Mch8g1007 595 MobiDBLite consensus disorder prediction 1 20 - -
Mch8g1007 595 Pfam Pectinesterase 284 580 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch8g1007 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 238 IPR035513 -
Mch8g1007 595 FunFam Pectinesterase 278 595 - -
Mch8g1007 595 PANTHER PECTINESTERASE 43 586 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch8g1007 595 NCBIfam pectinesterase inhibitor domain 54 237 IPR006501 GO:0004857(InterPro)
Mch8g1007 595 ProSitePatterns Pectinesterase signature 1. 309 328 IPR018040 -
Mch8g1007 595 MobiDBLite consensus disorder prediction 1 30 - -
Mch8g1007 595 Pfam Plant invertase/pectin methylesterase inhibitor 76 232 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1007 Mch-Chr8:7154372 Mch9g0172 Mch-Chr9:1300301 4.97E-282 dispersed
Mch8g1006 Mch-Chr8:7149800 Mch8g1007 Mch-Chr8:7154372 8.95E-129 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1007 K01051 - csv:101207996 865.914