Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1013 ATGGTGAAGAACTGGAGTTGGGGAGAGCCGTTGCTGCTAATCAATATTTGCATTTTTGGATGGATGGCCAGTTTCATCAGCGGAGATACGGATCCAGGAGATGTGTCTGCTCTAAATTCCATGTATAGTAGTTTAAACTTGCCTCCAATTCTAATACAATGGAGTTCAAGTGGTGGAGATCCATGTGGGCTAACTTGGAAAGGAATTACTTGCTCGGGCTCACGGGTCACAGAAATTTCATTGTCTGGCTTAGGGCTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACAGCTCTAATTAATCTAGATGTGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTGTATGCTTCTATTGTCATTCATTCTGACAAAGTTATATTTCCATTCCAACTTGTAAAATTATTTTCTTTCTGCAGAAACCTTGGATCTAATAACTACAGTGGAAGCTTACCCTATTCTATTTCTCAAATGAGTTCGCTTATTTCCTTAAACATCAGCCACAATCAGCTTCGGAATCAAGTGAATGATATGTTCTGGAACCTTTCTTCCCTGTCCACGTTGGATTTCTCTTTCAATTCTTTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTCACCAGTATGAACTCAATGTTTCTGCAGAACAACCAATTAAGTGGCACTATTGACGTTCTTGCAAATCTTCCACTACAAAATTTGAATGTCGAGAACAACAATTTTACTGGATGGATTCCTGAACGATTGAAGAATATAAATATACAGGAGGGTGCCAATTCTTGGAGCTTTGGGCTTGCACCCCCACCTCCACCCGGTACGCCAGTCAACCAAAATTACAGATATCACAAGCCTGGGATCAATTACAGCCCACTGAGTAGTGACGCTGGTGGTGGAGGTAGCAGTAGATCAGGAATCAGTGGTGGTGCCATTGCAGGAATTCTTATATCTGTGATAGTAGTTGGAGCGGTACTAGCATATCTCCTTGTAAAGCGAAGACCAAAGAGGTCATCCACAGACATAGAAAAGCAAAAGCAAAAGCTTGGGAACCTGCCTAGCGTATCTCCTGCTTCAAATGAAGTGCAAGATTCATTGGCAGAGATGAAGCTTATTCATACTTCATCTTCATTTGACGCAAAAGCATTGGATTCTCCTGCTTCAATCAACCTTAAACCCCCACCTATTGAACGTCATAAATCATTTGATGACAATGATACATTGAAGATATCTGTTGTGAAGAATACCAATGCCGCCCCTCCGATAAGTGTGAGGTCATATTCAATAGCAGATCTGCAAATGGCTACAGGCAGCTTCAATGTAGAAAACCTTCTTGGTGAGGGATCGTTTGGACGTGTTTATCGGGCTCAGTTTGATGATGGAAAGGTTCTTGCCGTGAAGAAAATAGATTCATCTGCCCTCCCTAGAGAACTTTTGGAAGATTTCACAGAGATCGTTGCCAATGTTTCTCAGCTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTACATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCATATAGCAGATGACTATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGGACGGCCCGTGCATTAGAGTACTTACATGAAGTATGTGCCCCATCAGTTGTTCACAGAAATATTAAATCAGCCAATATCTTACTGGATGCTGAACTCAATCCTCATCTCTCCGATTGTGGCCTGGCTAGCTTTATAACCAATCTAGATCAGGCATTGGATCAGCAAGCGGGATCCGGATACAGTGCCCCTGAGGTTACCATGTCGGGTCAATATACATTAAAGAGTGATGTATATAGCTTTGGAGTGGTGATGTTGGAACTTCTAAGCGGACGCAAGCCATTCGATAGTTCAAGGCCAAGAACCGAGCAGTCCTTGGTTCGATGGGCTACACCTCAGCTCCACGACATTGATGCCTTGACAAAAATGGTTGATCCAGCACTAAAAGGGCTCTACCCAGTCAAGTCGCTATCAAGATTTGCAGATGTTGTGGCTCTTTGTGTTCAGCCCGAGCCCGAATTCAGACCGCCCATGTCAGAGGTGGTAGAAGCGTTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCACACAGCATCTTTTAGAACTGATGATCCTGATGTCCAAGATACATCTTAA 2259 43.25 MVKNWSWGEPLLLINICIFGWMASFISGDTDPGDVSALNSMYSSLNLPPILIQWSSSGGDPCGLTWKGITCSGSRVTEISLSGLGLSGSLGYQLSSLTALINLDVSINNLGPDIPYQLPQNLQKLYASIVIHSDKVIFPFQLVKLFSFCRNLGSNNYSGSLPYSISQMSSLISLNISHNQLRNQVNDMFWNLSSLSTLDFSFNSLSGALPQSFSNLTSMNSMFLQNNQLSGTIDVLANLPLQNLNVENNNFTGWIPERLKNINIQEGANSWSFGLAPPPPPGTPVNQNYRYHKPGINYSPLSSDAGGGGSSRSGISGGAIAGILISVIVVGAVLAYLLVKRRPKRSSTDIEKQKQKLGNLPSVSPASNEVQDSLAEMKLIHTSSSFDAKALDSPASINLKPPPIERHKSFDDNDTLKISVVKNTNAAPPISVRSYSIADLQMATGSFNVENLLGEGSFGRVYRAQFDDGKVLAVKKIDSSALPRELLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHIADDYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLASFITNLDQALDQQAGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRTEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHTASFRTDDPDVQDTS 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7183135 7192828 - MC08g0891 Mch8g1013 694634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1013 752 ProSitePatterns Protein kinases ATP-binding region signature. 453 476 IPR017441 GO:0005524(InterPro)
Mch8g1013 752 MobiDBLite consensus disorder prediction 733 752 - -
Mch8g1013 752 PANTHER LEUCINE RICH REPEAT KINASE 2 323 721 IPR051420 -
Mch8g1013 752 SUPERFAMILY L domain-like 30 259 - -
Mch8g1013 752 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 411 524 - -
Mch8g1013 752 Gene3D Ribonuclease Inhibitor 140 269 IPR032675 -
Mch8g1013 752 ProSiteProfiles Protein kinase domain profile. 447 722 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1013 752 Pfam Protein tyrosine and serine/threonine kinase 449 719 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g1013 752 MobiDBLite consensus disorder prediction 345 368 - -
Mch8g1013 752 Gene3D Ribonuclease Inhibitor 34 137 IPR032675 -
Mch8g1013 752 SUPERFAMILY Protein kinase-like (PK-like) 428 719 IPR011009 -
Mch8g1013 752 MobiDBLite consensus disorder prediction 737 752 - -
Mch8g1013 752 MobiDBLite consensus disorder prediction 353 368 - -
Mch8g1013 752 Gene3D Transferase(Phosphotransferase) domain 1 526 745 - -
Mch8g1013 752 Gene3D Phosphorylase Kinase; domain 1 409 524 - -
Mch8g1013 752 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 525 733 - -
Mch8g1013 752 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 135 282 - -
Mch8g1013 752 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Mch8g1013 752 CDD STKc_IRAK 453 722 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1013 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1840 Mch-Chr1:18462526 Mch8g1013 Mch-Chr8:7183135 1.21E-125 dispersed
Mch4g0174 Mch-Chr4:1164393 Mch8g1013 Mch-Chr8:7183135 9.52E-120 dispersed
Mch5g1422 Mch-Chr5:15321490 Mch8g1013 Mch-Chr8:7183135 1.67E-104 dispersed
Mch5g1424 Mch-Chr5:15328696 Mch8g1013 Mch-Chr8:7183135 3.25E-117 dispersed
Mch8g1013 Mch-Chr8:7183135 Mch11g0054 Mch-Chr11:338613 3.10E-76 dispersed
Mch3g0804 Mch-Chr3:12118111 Mch8g1013 Mch-Chr8:7183135 2.38E-180 transposed
Mch4g1111 Mch-Chr4:11072431 Mch8g1013 Mch-Chr8:7183135 4.78E-184 transposed
Mch7g0025 Mch-Chr7:223736 Mch8g1013 Mch-Chr8:7183135 7.17E-34 transposed
Mch8g1013 Mch-Chr8:7183135 Mch9g0166 Mch-Chr9:1268020 1.09E-274 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch3g0804 . 361 654 Strubbelig Receptor Gene Family AT1G11130 53.1 5.6e-85 312.4
Mch9g0166 . 397 685 Strubbelig Receptor Gene Family AT1G11130 52.9 1.4e-83 307.8
Mch5g1424 . 9 726 Strubbelig Receptor Gene Family AT5G06820 51.1 1.7e-172 603.2
Mch4g0174 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.9 1.8e-209 726.1
Mch1g1840 . 29 750 Strubbelig Receptor Gene Family AT4G03390 53.6 2.3e-159 559.7
Mch4g1111 . 2 666 Strubbelig Receptor Gene Family AT3G13065 52.6 8.0e-140 494.6
Mch9g0166 . 7 685 Strubbelig Receptor Gene Family AT3G13065 51.1 5.0e-110 395.6
Mch4g1111 . 23 689 Strubbelig Receptor Gene Family AT1G78980 58.4 5.9e-183 637.9
Mch9g0166 . 28 690 Strubbelig Receptor Gene Family AT1G78980 52.9 1.8e-131 466.8
Mch8g1013 . 1 736 Strubbelig Receptor Gene Family AT1G53730 59.6 2.2e-209 725.7
Mch9g0166 . 1 696 Strubbelig Receptor Gene Family AT1G53730 64.4 1.6e-199 693.0
Mch3g0804 . 5 677 Strubbelig Receptor Gene Family AT1G53730 53.9 3.4e-149 525.8
Mch8g1013 . 11 734 Strubbelig Receptor Gene Family AT3G14350 51.5 3.4e-183 638.6
Mch9g0166 . 11 702 Strubbelig Receptor Gene Family AT3G14350 54.8 1.1e-173 607.1
Mch3g0804 . 208 685 Strubbelig Receptor Gene Family AT4G22130 69.7 3.3e-176 615.1
Mch8g1013 . 429 752 Strubbelig Receptor Gene Family AT4G22130 64.4 1.7e-119 426.8
Mch9g0166 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 1.3e-116 417.2
Mch4g0174 . 483 778 Strubbelig Receptor Gene Family AT4G22130 61.6 1.2e-106 384.0
Mch1g1840 . 461 750 Strubbelig Receptor Gene Family AT4G22130 60.1 7.3e-99 358.2
Mch4g1111 . 379 688 Strubbelig Receptor Gene Family AT4G22130 55.8 7.3e-99 358.2
Mch5g1424 . 375 695 Strubbelig Receptor Gene Family AT4G22130 51.7 9.6e-91 331.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77592 PF07714 PK_Tyr_Ser-Thr 8.40E-43 CL0016 Mch PK