Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1017 ATGGGATCAATAGAGGAGAAAACAAATTACCTATCAGATGAAGAGATTCCATTCAGGTCATCACCAGTCGCGAAGAATGTATTGCATAGTTTTGATTTTGAGACGGCTCATGTGCGTTCTTCCCCAGATGCTTCAACATGGTGGAATATTAACAACATTCGTATTAGACCTCTCAAAAGTGCATATATAGTGTTGGTTAGAGCAAAGATCAACGTGTTGCTACCTTTTGGTCCTTTGGCAATTCTGCTACATTATTTAACTGGAAAACATGGATGGGTCTTCTTTTTCACTTTACTTGGAATTACACCTTTGGCAGAACGTCTTGGTTATGCAACTGAGCAACTTGCTTTCTACACTGGTCCAACAGTTGGTGGTCTTTTGAACGCAACTTTTGGAAATGCAACCGAAATGATTATATCAATTTACGCATTAAAGAGTGGGATGATTAGGGTTGTTCAACAGTCATTACTGGGGTCAATCTTGTCAAATATGCTCCTAGTTCTTGGTTGCGCTTTCTTCACTGGTGGGATTATTCATCATAAGAAGGTGCAGACTTTTAATAAGGGTACTGCTGTTGTGAATTCAGGATTGTTGTTGATGGCTGTTATGGGAACAACTTTTCCGGCTGTGCTTCATTTCACCCACACAGAACTTCATTTTGGGGAGTCAGCATTGTCTCTTTCAAGATTTAGCAGTTGTATAATGTTAGTTGCATATGCAAGCTACCTTTTTTTTCAACTAAAAAGTCAGCATAATCTTTATGGTCCTCTTGATGAGGAAGTTGATGATGGAGATGCGGATGCTTCTGAAATGTTTGCCTGGGAAGCAATTGGATGGCTTGCTATCTTGACTGTATGGGTGTCTGTTTTATCTGGATACCTTGTGGATGCCATCCAGGGAGCATCCGAGTCATTAAATTTGCCAGTGGCGTTTATTAGTGTAATTTTGTTGCCCATTGTTGGAAATGCTGCCGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTGACATAACCCTTGGAGTTGCTATTGGATCATCTACACAAATATCCATGTTTGTGATCCCGTTTTGCGTGGTCGTTGGATGGTGCATGGGAAAACCAATGGACTTGAACTTTAAACTCTTTGAGACAGCAACTCTGTTTATCACCGTGCTAGTGGTAGCCTTTATGTTGCAGGAAGGGACATCAAATTATTTCAAAGGTCTAATGCTTATTCTATGCTACCTCATTGTGGCTGCCAGTTTTTTTGTACATGTTGACCCTAGCAATGGTGAGTAG 1287 40.56 MGSIEEKTNYLSDEEIPFRSSPVAKNVLHSFDFETAHVRSSPDASTWWNINNIRIRPLKSAYIVLVRAKINVLLPFGPLAILLHYLTGKHGWVFFFTLLGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIIHHKKVQTFNKGTAVVNSGLLLMAVMGTTFPAVLHFTHTELHFGESALSLSRFSSCIMLVAYASYLFFQLKSQHNLYGPLDEEVDDGDADASEMFAWEAIGWLAILTVWVSVLSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGKPMDLNFKLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPSNGE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7198468 7202619 - MC08g_new0124 Mch8g1017 694638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1017 428 FunFam Vacuolar cation/proton exchanger 121 260 - -
Mch8g1017 428 Gene3D - 121 261 IPR044880 -
Mch8g1017 428 Gene3D - 267 420 IPR044880 -
Mch8g1017 428 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 25 424 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Mch8g1017 428 Pfam Sodium/calcium exchanger protein 92 247 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1017 428 Pfam Sodium/calcium exchanger protein 276 418 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1017 428 NCBIfam calcium/proton exchanger 73 419 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Mch8g1017 428 FunFam Vacuolar cation/proton exchanger 264 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0613 Mch-Chr1:10320444 Mch8g1017 Mch-Chr8:7198468 1.13E-107 dispersed
Mch2g0453 Mch-Chr2:3304559 Mch8g1017 Mch-Chr8:7198468 2.12E-196 dispersed
Mch8g1017 Mch-Chr8:7198468 Mch5g1936 Mch-Chr5:19309968 2.74E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1017 K07300 - csv:101219432 788.104