Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1018 ATGAGACCGCTTCAGCCGCCGCAGGGTGCGAATCCGGCCACCGATCGTCCTCGCCGTCGCCTGAATCTAACCCTTCCTCTTCCCCAGCGGGATAACACGTCTTTGGCGGTTCCTCTCCCTCTGCCTCCCACTTCCTCCAACTCCGCTCCTCCTTCCACCAGTCAACTCCACAACAACTCCACCGCCGTGAACCGCCAGCCGGAGCTTCACCCTCAGCCTCAGCGGCATCACCCGTTCAGCCTCTCGGAGTTGGAGCGAGTGAGTCGAATCGGAAGCGGATGCGGAGGCACCGTCTACAAAGTGATACACCGTCCCACCGGTCGCGTCTATGCTCTGAAGGCGATTTACGGCAACCACGAGGACGCGGTGAGGATCCAGATGTGCCGCGAGGTCGAGATCCTTCGCGACGTTGACGATCCTAATGTGGTGAAGTGCCACGACATGTTCGATCACAACGGCGAAATCCAAGTCCTCCTCGAGTACATGGATCGGGGTTCTCTGGAAGGAACGCACATCCCTCAGGAGGACCGCCTCTCGGATTTGGCTCGCCAGATTCTGAGCGGCCTCGCTTACCTCCATAGCCGCCGCATCGTCCATCGCGACATCAAACCCTCGAATCTCCTTATCAATTCCCGTAGGCAGGTTAAGATCGCCGATTTCGGCGTCGGCCGAATCTTGGAGCAGACCATGGACCCCTGCAACTCGTCGGTGGGCACAATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGTTATGCTGGGGATATTTGGAGCTTTGGAGTTAGCATATTGGAATTCTATCTTGGAAGGTTTCCTCTTGCTGTGGAGAGACCCGGGGATTGGGCGAGCTTGATGTGCGCAATATGTATGGCTCAGCCCCCGGAGGCGCCGCCCACCGCCACGCCGGAGTTCCGCCACTTTATTTCCTGTTGTTTGCAGCGAGAGGCTTGGAGGAGATGGACTGCAGCTCGATTGTTGGATCACCCATTTATAACAGGGAAGAGCAGAGCAAGCCAGTACCAGAACCAGCAGGCTCATCACCAGAATCTCCGGCAACTATTACCTCCTCCGCCCCTTCATCCTTCCAGCCTTTCTTGA 1122 56.95 MRPLQPPQGANPATDRPRRRLNLTLPLPQRDNTSLAVPLPLPPTSSNSAPPSTSQLHNNSTAVNRQPELHPQPQRHHPFSLSELERVSRIGSGCGGTVYKVIHRPTGRVYALKAIYGNHEDAVRIQMCREVEILRDVDDPNVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEDRLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTATPEFRHFISCCLQREAWRRWTAARLLDHPFITGKSRASQYQNQQAHHQNLRQLLPPPPLHPSSLS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7204547 7205668 - MC08g_new0125 Mch8g1018 694639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1018 373 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524(InterPro)
Mch8g1018 373 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 53 343 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Mch8g1018 373 SUPERFAMILY Protein kinase-like (PK-like) 61 353 IPR011009 -
Mch8g1018 373 MobiDBLite consensus disorder prediction 345 373 - -
Mch8g1018 373 FunFam Mitogen-activated protein kinase 2 164 351 - -
Mch8g1018 373 SMART serkin_6 84 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1018 373 Gene3D Phosphorylase Kinase; domain 1 53 163 - -
Mch8g1018 373 Gene3D Transferase(Phosphotransferase) domain 1 164 363 - -
Mch8g1018 373 ProSiteProfiles Protein kinase domain profile. 84 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1018 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g1018 373 MobiDBLite consensus disorder prediction 1 60 - -
Mch8g1018 373 Pfam Protein kinase domain 85 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1018 373 MobiDBLite consensus disorder prediction 38 60 - -
Mch8g1018 373 CDD PKc_MAPKK_plant_like 82 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1018 K13413 - - csv:101219669 602.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1570 Mch-Chr3:17718940 Mch8g1018 Mch-Chr8:7204547 8.39E-101 dispersed
Mch8g1018 Mch-Chr8:7204547 Mch8g1481 Mch-Chr8:11163807 1.36E-43 dispersed
Mch8g1018 Mch-Chr8:7204547 Mch2g0539 Mch-Chr2:3790771 2.35E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0943 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 69.6 3.6e-133 471.5
Mch8g3227 . 28 352 MAP Kinase Kinase Gene Family AT4G26070 66.6 2.1e-125 445.7
Mch8g3186 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.9 6.2e-109 391.0
Mch6g0943 . 1 324 MAP Kinase Kinase Gene Family AT4G29810 69.5 1.2e-133 473.0
Mch8g3227 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 62.5 4.7e-117 417.9
Mch8g3186 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 60.0 1.1e-110 396.7
Mch8g1481 . 36 510 MAP Kinase Kinase Gene Family AT5G40440 79.3 9.7e-228 786.2
Mch8g1018 . 1 371 MAP Kinase Kinase Gene Family AT1G51660 64.9 7.0e-127 450.7
Mch8g1018 . 1 371 MAP Kinase Kinase Gene Family AT3G21220 65.1 3.0e-127 451.8
Mch3g1570 . 39 310 MAP Kinase Kinase Gene Family AT3G21220 54.8 4.9e-85 311.6
Mch8g3186 . 1 355 MAP Kinase Kinase Gene Family AT5G56580 84.8 3.1e-172 601.3
Mch6g0943 . 10 350 MAP Kinase Kinase Gene Family AT5G56580 58.5 2.9e-117 418.7
Mch8g3227 . 1 341 MAP Kinase Kinase Gene Family AT5G56580 56.9 6.4e-109 391.0
Mch3g1570 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 62.7 8.0e-108 387.1
Mch8g1018 . 73 339 MAP Kinase Kinase Gene Family AT1G18350 51.5 9.6e-77 283.9
Mch3g1570 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 52.6 4.2e-82 301.6
Mch3g1570 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 65.4 4.4e-114 407.9
Mch8g1018 . 80 339 MAP Kinase Kinase Gene Family AT1G73500 52.1 7.4e-77 284.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77593 PF00069 Pkinase 2.20E-59 CL0016 Mch PK