Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1049 AAAATGGCCACCGAAACTCTTCCGAACGACTTCATTTTCCGGTCAAAACTCCCCGACATCTACATCCCCAAACACCTTCCCCTGCACTCCTACTGCCTCCACGAGAACGCCGCCAAGATCGGCCACCGGACCTGCCTCATCAATGGCGTCACCGGCGACTCCTACACCTACGCCGACGTCGATCTCACCGCCCGCAAGGTCGCCTCCGGTCTGAACAAGCTCGGCATTGCGCAAGGCGATGTCCTAATGCTCCTCCTCCCGAATTCGCCTGAATTCGTCTTCGCCTTCCTCGGCGCGTCCTACCGCGGCGCGATCATGACGGCGGCGAATCCTTTCTTCACGGCGGCGGAGATCGCGAAGCAAGCCAAAGGATCGAAGGCGAAATTGATCATTACGCAAGCGTCGTATTACGACAAAGTAAAGGAAATAACAGAGGAATTACCAGATGTCAAAATCATGACCGTCGATTCTCCGCCGGACGGTTGCTTGTCGTTCTCCGATTTGACTCAGGCCGACGAGCGGGAGATTCCGGCGGTGGATATCGGTCCAGACGACGTCGTGGCGCTGCCGTATTCCTCCGGCACGACGGGATTGCCGAAAGGCGTGATGCTCACTCACAAAGGCTTAGTCACCAGTGTGGCTCAGCAAGTGGACGGCGATAATCCGAATCTGTACTTCCGAAACGACGACGTAATCTTGTGCGTTTTGCCGCTCTTCCATATTTACTCGCTGAATTCCGTTCTCCTCTGCGGATTGCGCGCCGGCGCCACCATTCTGATTTTGCCTAAATTTGAGATCGCTTCTCTGCTTCAATTGGTACAGAAATACAGAGTGTCCATCGCGCCGGTGGTTCCGCCGATCGTTCTCGCCATCGCGAAGTCGCCGGACCTCGATAAATACGACCTTTCTTCCATCAGAGTTCTGAAATCCGGCGGCGCTCCGCTCGGGAAGGAGCTTGAAGATACCGTGAGAGCTAAGTTTCCGAAGGCAGTGCTCGGCCAGGGATACGGAATGACAGAGGCCGGCCCGGTGCTAACCATGGGTTTGGCGTTTGCAAAAGAGCCGTTTCCGATGAAGCCAGGTGCCTGCGGCACCGTCGTCCGGAACGCCGAGATGAAGATCGTCGACACCGAGAACGGCGCCTCACTTCCCCGAAACACGCCGGGAGAGATCTGCATCAGAGGCGATCAAATCATGAAAGGCTATCTGAACAATCCGGAGGCGACGGTGGCCACCATAGACGCCGACGGATGGTTGCACACCGGCGACATCGGCTTCATCGACGACGACGACGAGCTTTTCATCGTCGATCGGTTGAAGGAATTGATCAAGTACAAGGGATTCCAAGTCGCGCCGGCGGAACTCGAGGCTCTGTTGCTCACTCATACGGTCATCACCGATGCCGCCGTTGTCCCAATGAAAGATGAACAAGCTGGAGAGGTTCCGGTTGCGTTTGTGGTGAAATCGAAGAGTTCTGAAGTCACTGAAGATGAAATTAAACAATTTATATCAAAACAGGTGGTGTTCTACAAGAGAATCAACCGGGTGTTTTTCATTGACGCAATTCCCAAATCGCCCTCCGGCAAGATCTTGAGGAAGGAGTTGAGGGCAAAATTGGCAGATGTTTCTCCTAATTCT 1638 54.52 KMATETLPNDFIFRSKLPDIYIPKHLPLHSYCLHENAAKIGHRTCLINGVTGDSYTYADVDLTARKVASGLNKLGIAQGDVLMLLLPNSPEFVFAFLGASYRGAIMTAANPFFTAAEIAKQAKGSKAKLIITQASYYDKVKEITEELPDVKIMTVDSPPDGCLSFSDLTQADEREIPAVDIGPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGDNPNLYFRNDDVILCVLPLFHIYSLNSVLLCGLRAGATILILPKFEIASLLQLVQKYRVSIAPVVPPIVLAIAKSPDLDKYDLSSIRVLKSGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTENGASLPRNTPGEICIRGDQIMKGYLNNPEATVATIDADGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHTVITDAAVVPMKDEQAGEVPVAFVVKSKSSEVTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLADVSPNS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7367318 7371337 - MC08g0923 Mch8g1049 694670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1049 546 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Mch8g1049 546 Pfam AMP-binding enzyme 34 403 IPR000873 -
Mch8g1049 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 440 - -
Mch8g1049 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 536 - GO:0016405(PANTHER)
Mch8g1049 546 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Mch8g1049 546 Gene3D - 440 542 IPR045851 -
Mch8g1049 546 CDD 4CL 22 535 - -
Mch8g1049 546 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Mch8g1049 546 SUPERFAMILY Acetyl-CoA synthetase-like 14 542 - -
Mch8g1049 546 Gene3D - 7 439 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0535 Mch-Chr6:3624512 Mch8g1049 Mch-Chr8:7367318 1.90E-252 dispersed
Mch8g1049 Mch-Chr8:7367318 Mch8g2685 Mch-Chr8:30119516 5.67E-271 dispersed
Mch11g0071 Mch-Chr11:451915 Mch8g1049 Mch-Chr8:7367318 7.21E-121 transposed
Mch1g0118 Mch-Chr1:2997469 Mch8g1049 Mch-Chr8:7367318 6.90E-32 transposed
Mch1g2094 Mch-Chr1:20306948 Mch8g1049 Mch-Chr8:7367318 6.71E-25 transposed
Mch2g1622 Mch-Chr2:13499053 Mch8g1049 Mch-Chr8:7367318 9.56E-240 transposed
Mch3g0567 Mch-Chr3:9912064 Mch8g1049 Mch-Chr8:7367318 8.80E-134 transposed
Mch5g1728 Mch-Chr5:17941643 Mch8g1049 Mch-Chr8:7367318 7.22E-47 transposed
Mch6g2223 Mch-Chr6:24473999 Mch8g1049 Mch-Chr8:7367318 5.47E-105 transposed
Mch8g1325 Mch-Chr8:9752578 Mch8g1049 Mch-Chr8:7367318 1.24E-20 transposed
Mch9g1823 Mch-Chr9:20021828 Mch8g1049 Mch-Chr8:7367318 2.76E-118 transposed
Mch9g2378 Mch-Chr9:23652413 Mch8g1049 Mch-Chr8:7367318 7.26E-137 transposed
Mch5g0758 Mch-Chr5:5114179 Mch8g1049 Mch-Chr8:7367318 2.43E-36 wgd
Mch8g1049 Mch-Chr8:7367318 Mch9g0492 Mch-Chr9:3635471 1.92E-294 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1049 K01904 - csv:101215427 964.911