Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1060 ATGGCGGATCTCAAAGAGCGGTTGCTTCCTCCGAAACCTGCATCTGCTATAAATCTTAGGGAGGGAATTAATAATCGACCATCAGCCTCTGGAAGGCTGCCTTTTCAAGGTGTGGATGTTTTAGGGCTGAAGAAGCGAGGCCAGGGACTTAGATCTTGGATCCGGGTAGATTCCTCTGGGAATTCCCAGATCATTGAGGTCGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCTCGTGATTTGCGCTTGCTCGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTGGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGAAGAAGTCTTGCTGCTAAATTCTCTTGATAGTTATGTATTTCAGTATGTGGTAGAGCTACAAAGGCGATTGAAAACCACTGGGGTTGATGAAGTTTGGCAGAATGATGCAAATCATGGAACTGACTTAAATCGAAGAAGGGGAAGTAGGAATTTTGATAATGTATTTGGAAGCACCTCTCCTGATTATTTGCCCTTTGAGTTTAGGGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCTCAGGCTGCAGAATTAGAAATCGAGGCATATCCATTGCTAGATGAACTTACATCAAAAATCAGTACATTAAATTTGGAGCGTGTCCGTCGCTTGAAGAGCAGACTTGTTGCCCTAACTCGTAGGGTTCAGAAGGTCAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTATCTCACTGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCCGTGTCGGGATACAGATCAATTGATGGAGCATCTATTTCTGCTCCCGTTTCTCCTGTATCTTCACCGCCTGAAACTCGGAAGCTTGAGAAGAGCCTGAGCATTGCAAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAATATAGAGGAGCTTGAGATGCTGCTTGAAGCTTATTTTGTTGTCATTGATAGCACCCTGAACAAGTTGACATCGTTGAAGGAGTACATCGATGACACAGAAGATTTCATCAACATCCAGTTGGATAATGTACGAAATCAGTTGATTCAGTTCGAGTTACTACTCACTACCGCAACATTTGTCGTTGCCATTTTTGGGGTGGTAGCAGGAATCTTTGGCATGAATTTTGAAATACCAATGTTTGGGTATCCTGAAGCATTCAAGTGGGTCCTTGTTATTACTGGAGTAAGTGGAATCATCATATTTTCTGCATTTGTTTGGTTTTTTAGATACAAAAGACTGATGCCACTTTAA 1344 42.41 MADLKERLLPPKPASAINLREGINNRPSASGRLPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITAEEVLLLNSLDSYVFQYVVELQRRLKTTGVDEVWQNDANHGTDLNRRRGSRNFDNVFGSTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVSGYRSIDGASISAPVSPVSSPPETRKLEKSLSIARSRHESMRSSESATENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGYPEAFKWVLVITGVSGIIIFSAFVWFFRYKRLMPL 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7453566 7457137 + MC08g0932 Mch8g1060 694681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1060 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 444 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Mch8g1060 447 FunFam Magnesium transporter MRS2-1 41 124 - -
Mch8g1060 447 CDD Mrs2_Mfm1p-like 53 444 IPR039204 -
Mch8g1060 447 Gene3D Magnesium transport protein CorA, transmembrane region 385 445 - -
Mch8g1060 447 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 437 IPR045863 -
Mch8g1060 447 Gene3D Magnesium transport protein CorA, transmembrane region 127 378 - -
Mch8g1060 447 Coils Coil 228 255 - -
Mch8g1060 447 FunFam Magnesium transporter MRS2-1 385 445 - -
Mch8g1060 447 Gene3D - 41 124 - -
Mch8g1060 447 Pfam Magnesium transporter MRS2-like 326 375 - -
Mch8g1060 447 Pfam Magnesium transporter MRS2-like 57 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1060 K16075 - - csv:101217419 810.446
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0620 Mch-Chr3:10588767 Mch8g1060 Mch-Chr8:7453566 1.18E-12 dispersed
Mch4g0797 Mch-Chr4:5514716 Mch8g1060 Mch-Chr8:7453566 1.44E-103 dispersed
Mch6g1995 Mch-Chr6:22361998 Mch8g1060 Mch-Chr8:7453566 1.15E-101 dispersed
Mch8g0141 Mch-Chr8:881381 Mch8g1060 Mch-Chr8:7453566 8.64E-139 dispersed
Mch8g1060 Mch-Chr8:7453566 Mch7g1013 Mch-Chr7:14312521 5.10E-107 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g1060 . 1 448 MRS2 Gene Family AT1G16010 84.2 4.6e-205 710.7
Mch8g0141 . 1 393 MRS2 Gene Family AT1G16010 55.1 7.0e-113 404.4
Mch7g1013 . 1 366 MRS2 Gene Family AT5G64560 82.6 2.8e-163 571.6
Mch6g1995 . 1 376 MRS2 Gene Family AT5G64560 69.8 6.8e-133 470.7
Mch4g0797 . 69 526 MRS2 Gene Family AT3G19640 66.3 2.4e-154 542.3
Mch10g0557 . 55 430 MRS2 Gene Family AT3G58970 68.9 2.7e-133 472.2
Mch8g0141 . 3 393 MRS2 Gene Family AT2G03620 66.2 4.3e-136 481.5
Mch8g1060 . 13 448 MRS2 Gene Family AT2G03620 53.4 1.5e-112 403.3
Mch7g1013 . 1 328 MRS2 Gene Family AT5G09690 76.2 5.1e-129 457.6
Mch6g1995 . 1 338 MRS2 Gene Family AT5G09690 65.8 2.6e-109 392.1
Mch8g1060 . 40 383 MRS2 Gene Family AT5G09690 50.6 4.1e-78 288.5
Mch7g1013 . 23 288 MRS2 Gene Family AT5G09720 69.1 2.2e-91 332.4
Mch6g1995 . 7 286 MRS2 Gene Family AT5G09720 59.6 5.4e-77 284.6
Mch8g1060 . 1 448 MRS2 Gene Family AT1G80900 82.6 1.3e-199 692.6
Mch8g0141 . 1 393 MRS2 Gene Family AT1G80900 54.2 1.9e-110 396.4
Mch3g0620 . 61 462 MRS2 Gene Family AT5G22830 73.0 1.1e-156 550.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42