Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1066 GTTCTGTTTGGGAAATACGAAATGGGGCGGCTATTAGGGAAAGGGACCTTTGCTAAGGTCTATTATGGAAGAAACTTGGTGACCCACGAGAGCGTCGCAATTAAAGTGATCCTCAAGGAGAGGGTGAAGAAAGAGGGGCTTCTGGATCAAATCCAGCGAGAAATCTCCGTCATGGGCCTGGTTCGTCACCCCCACATCGTGGAATTAAAAGAAGTAATGGCGACGAAATCAAAGGTTTACTTTGTGATGGAGTACGTTAGTGGCGGCGAACTGTTTGTGAAATTGTCTAAACAAGGAAAACTGACGGAGGACGCAGCCAGAAAGTACTTTCGGCAGCTCGTCTCCGCCGTCGACTTCTGCCACAGCCGCGGCGTCTCGCACCGGGACTTGAAGCCGGAGAATCTCCTTCTCGACGTGAATGGGAATTTGAAGGTCTCCGATTTTGGCCTCTCCGCCCTGCCGGAGCAGCTCCGAGTCGATGGTTTGCTCCACACGCGGTGCGGGACGCCGGCATATGTGGCGCCTGAGGTGCTCCGAAAGCGCGGATACGACGGCGCCAAGGTAGATATCTGGTCTTGTGGGGTGATCCTGTATGTTTTGCTTGCTGGGGCTCTGCCATTTCGAGCTGATAATGTGATGAAGCTGTATAGGAAGATTTTCAAGGCCGACTTCGAGTTTCCCCCATGGTTTTCTTCGGAATCCATGGAAATGATCTCCAAGTTTCTTGTTGTTGATCCAGAGAATAGAGTTTCAATGCCAGAGATAATGCAAAGTCCTTGGTTTCGAAACGGCTTCTCAAAGCCAATTTCATTCAGTGAGAAAGATGAATTCAACAATGAAATCTCTGAACTGGGGAACCCCAAGTTATCTTCTCCTCCATTTTACAATGCCTTTGAGTTCATTTCCACAATGTCCTCTGGTTTTGATTTGTCAAGCTTGTTTGAGAGCAAGAAGAAATCAGGGTCCATTTTCACTTCAAAGTGCTCTGCCTCGGCCATTGTAGCCAAGCTTCAGTCTCTGGCTCAGAAGGTGAATTTCAAGGCCACTAATCTGAAGGAGTGCAAGGTGAGGCTGCAGGCGAAGGAGGAGGGGAGGAAAGGGAAGCTGACAGTCACAGCGGAGGTTTTCGAGGTGGCACCGGAGCTGGCAGTGGTCGAGTTCTCGAAGTCGGCCGGGGACACTCTGGAGTACAACAAGTTCTGTGAGAAGGATGTGAGGCCTGCACTGAAAGACATAGTTTGGAGCTGGCAAGGGGAGAGTGAG 1263 50.28 VLFGKYEMGRLLGKGTFAKVYYGRNLVTHESVAIKVILKERVKKEGLLDQIQREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVSGGELFVKLSKQGKLTEDAARKYFRQLVSAVDFCHSRGVSHRDLKPENLLLDVNGNLKVSDFGLSALPEQLRVDGLLHTRCGTPAYVAPEVLRKRGYDGAKVDIWSCGVILYVLLAGALPFRADNVMKLYRKIFKADFEFPPWFSSESMEMISKFLVVDPENRVSMPEIMQSPWFRNGFSKPISFSEKDEFNNEISELGNPKLSSPPFYNAFEFISTMSSGFDLSSLFESKKKSGSIFTSKCSASAIVAKLQSLAQKVNFKATNLKECKVRLQAKEEGRKGKLTVTAEVFEVAPELAVVEFSKSAGDTLEYNKFCEKDVRPALKDIVWSWQGESE 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7538333 7539595 + MC08g0938 Mch8g1066 694687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1066 421 ProSitePatterns Protein kinases ATP-binding region signature. 12 44 IPR017441 GO:0005524(InterPro)
Mch8g1066 421 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 2 407 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch8g1066 421 ProSiteProfiles NAF domain profile. 290 315 IPR018451 GO:0007165(InterPro)
Mch8g1066 421 CDD CIPK_C 296 410 - -
Mch8g1066 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g1066 421 SUPERFAMILY Protein kinase-like (PK-like) 2 262 IPR011009 -
Mch8g1066 421 CDD STKc_SnRK3 5 260 - -
Mch8g1066 421 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Mch8g1066 421 Pfam NAF domain 292 347 IPR004041 GO:0007165(InterPro)
Mch8g1066 421 Gene3D Kinase associated domain 1, KA1 295 415 - -
Mch8g1066 421 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1066 421 Gene3D Transferase(Phosphotransferase) domain 1 1 294 - -
Mch8g1066 421 FunFam Non-specific serine/threonine protein kinase 290 414 - -
Mch8g1066 421 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1066 421 FunFam Non-specific serine/threonine protein kinase 1 287 - -
Mch8g1066 421 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g0485 Mch-Chr7:7481364 Mch8g1066 Mch-Chr8:7538333 3.38E-45 dispersed
Mch8g1066 Mch-Chr8:7538333 Mch8g2989 Mch-Chr8:32521646 4.16E-166 dispersed
Mch11g0507 Mch-Chr11:3220558 Mch8g1066 Mch-Chr8:7538333 1.48E-213 wgd
Mch6g0631 Mch-Chr6:4301878 Mch8g1066 Mch-Chr8:7538333 1.38E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77597 PF00069 Pkinase 1.60E-75 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1066 - - - 0.0