Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1072 ATGGACACAGATCAGGAAGCTCCATCCACGCCGGGGACACCTGGAGCTCCTCTTTTTGAAGGGATCAGGGCGGAACACCATGGAAATGGAAATGGTAAAAGATCTCTTCTCAAGAACTGCATCTCTTTCAATGCCGATGATTGGACCAATGAAGAAAGAGGCTTATCCTCCAAGGTCTCTTGTTCATTGTCGCCTCCTCCTATCTCGCTTGCAAGAAAGGTGGGAGCAGAGTTCATCAGTACTCTGATGCTCATCTTTGCTGGAACCGCCACGGCCATTGTAAACCAGAAGACACAAGGAACCGAAACACTCATCGGCCTAGCAGCCTCGACCGGGCTGGCGGTGATGATTGTCATCTCGTCGACTGGCCACATCTCTGGAGCCCATCTGAACCCGGCCATCACCATTGCTTTTGCAGCACTAAAGCACTTTCCATGGAAGCATGTTCCGGTGTATATTGGAGCTCAAATGGTGGCTTCTCTGTGTGCTTCTTTTGCATTGAAATGGATCTTTGATCCAATAATGGGGGGAGGAGTCACTGTTCCTTCAGTTGGATATGAGCAGGCTTTTGCTCTAGAGTTCATCATTAGCTTCAACCTCATGTTTGTCATCACCGCAGTCGCCACTGATACTCGAGCTGTGGGAGATTTGGCGGGAATCGCGGTAGGAGCAACAGTCATGCTCAATGTCCTCATCGCCGGGGAAACAACTGGAGCTTCAATGAATCCAGTGAGAACACTGGGGCCAGCCATAGTTACAAATAACTTTAAAGCCATATGGGTTTACCTCACAGCTCCCATCCTAGGGACATTGTGTGGGGCTGGCATCTACACTGCAGTAAAGTTGCCTGACGAACATGGCGACGTGCATAGGAAGCCTTCTGCCGAGCGCAGCTTCCGAAGATGA 906 50.22 MDTDQEAPSTPGTPGAPLFEGIRAEHHGNGNGKRSLLKNCISFNADDWTNEERGLSSKVSCSLSPPPISLARKVGAEFISTLMLIFAGTATAIVNQKTQGTETLIGLAASTGLAVMIVISSTGHISGAHLNPAITIAFAALKHFPWKHVPVYIGAQMVASLCASFALKWIFDPIMGGGVTVPSVGYEQAFALEFIISFNLMFVITAVATDTRAVGDLAGIAVGATVMLNVLIAGETTGASMNPVRTLGPAIVTNNFKAIWVYLTAPILGTLCGAGIYTAVKLPDEHGDVHRKPSAERSFRR 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7599888 7603195 + MC08g0944 Mch8g1072 694693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1072 301 Pfam Major intrinsic protein 69 277 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1072 301 PANTHER AQUAPORIN NIP2-1 62 285 IPR034294 -
Mch8g1072 301 CDD MIP 72 277 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1072 301 FunFam Aquaporin NIP2-1 60 292 - -
Mch8g1072 301 MobiDBLite consensus disorder prediction 1 25 - -
Mch8g1072 301 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1072 301 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1072 301 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1072 301 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1072 301 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1072 301 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1072 301 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Mch8g1072 301 Gene3D Glycerol uptake facilitator protein. 38 289 IPR023271 -
Mch8g1072 301 SUPERFAMILY Aquaporin-like 69 286 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2661 Mch-Chr6:28289306 Mch8g1072 Mch-Chr8:7599888 5.84E-117 dispersed
Mch6g2662 Mch-Chr6:28299254 Mch8g1072 Mch-Chr8:7599888 4.27E-102 dispersed
Mch8g1072 Mch-Chr8:7599888 Mch8g1676 Mch-Chr8:14723573 8.01E-64 dispersed
Mch8g1072 Mch-Chr8:7599888 Mch1g0862 Mch-Chr1:12020213 3.57E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1072 K09874 - csv:101207376 479.559