Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1082 ATGGCGAGACCTCAACACAAGTACAGAGGAGTCCGGCAGCGCCATTGGGGCTCTTGGGTCTCTGAGATTCGCCACCCTTTATTGAAGACAAGGATATGGCTGGGAACTTTTGAAACGGCTGAAGACGCCGCTCGAGCTTACGACGAAGCAGCCAGAATAATGTGTTGCCCTAATAATCTCTCCTCCAATCACAATGCGCCACCTCAGTACTCCTCGTCCGCATCGACGTTGGGGCCGGTGTCGAAGCTTCTCACTCCGACTTTGATCGATAAATTGGAGAAATGTCGAATGGCTTCCTTCCAAATGGCCAAAAAGAAACTCCCCACCAAAACGCACCTATCCGACCGGAGTCGCCGTCCGGCGGCGAAACTCGACGGCGGAGGAGTTCAATCGCCGGAGACTCAGGAGTTTCACCGGCTTGAAGACGACCACGTAGAGCAAATGATACAAGAGTTGCTTGATCTTGGCTCCTTTCACTTTTGCCCT 486 52.88 MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNLSSNHNAPPQYSSSASTLGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLSDRSRRPAAKLDGGGVQSPETQEFHRLEDDHVEQMIQELLDLGSFHFCP 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7650517 7651674 + MC08g0954 Mch8g1082 694703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1082 162 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1082 162 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1082 162 MobiDBLite consensus disorder prediction 108 122 - -
Mch8g1082 162 CDD AP2 7 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1082 162 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 103 IPR050913 -
Mch8g1082 162 FunFam Ethylene-responsive transcription factor 2 6 64 - -
Mch8g1082 162 Pfam AP2 domain 7 52 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1082 162 ProSiteProfiles AP2/ERF domain profile. 7 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1082 162 SUPERFAMILY DNA-binding domain 7 55 IPR016177 GO:0003677(InterPro)
Mch8g1082 162 MobiDBLite consensus disorder prediction 106 133 - -
Mch8g1082 162 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1082 162 SMART rav1_2 7 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1082 Mch-Chr8:7650517 Mch8g3079 Mch-Chr8:33261065 5.75E-26 dispersed
Mch11g0520 Mch-Chr11:3342964 Mch8g1082 Mch-Chr8:7650517 3.35E-47 wgd
Mch8g0487 Mch-Chr8:3421508 Mch8g1082 Mch-Chr8:7650517 1.51E-43 wgd
Mch8g1082 Mch-Chr8:7650517 Mch9g0455 Mch-Chr9:3388481 3.41E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43846 PF00847 AP2 1.60E-11 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1082 - - - 0.0