Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1083 ATGACCGACATTAGCTTGGAAGAAATCAAGAATGAGAACATCGATCTTGAGCGCATACCAGTTCAGGAAGTGTTTGAACAACTGAAATGTTCCCGAGAAGGTTTGTCCTCGGAGGAGGGGCGCAAGAGGCTCCAACTCTTTGGCCCAAATAAGCTGGAAGAGAAAAAGGAAAGTAAATTTCTCAAGTTTCTGGGCTTTATGTGGAATCCACTTTCGTGGGTTATGGAAGCAGCAGCTATCATGGCCATAGCTCTTGCCAATGGAGGGGGGCAACCACCGGATTGGCAAGATTTTGTGGGTATTACTGCGTTGCTTTTCATCAATTCTACAATCAGCTTTATAGAGGAAAACAATGCAGGCAATGCTGCAGCTGCACTTATGGCAGGACTTGCACCAAAAACAAAGGTCCTTCGTGATGGGAGATGGTGTGAGGAAGAGGCTGCAATCTTAGTTCCGGGAGATGTTATCAGTATTAAGTTGGGTGATATTGTTCCAGCAGATGCTCGTCTGTTGGATGGCGATCCGCTCAAGATTGATCAGTCTGCTCTTACTGGTGAGTCTTTGCCAGTTACAAAAAATGCTGGTGATGAAGTGTTTTCTGGTTCCACTGTCAAGCAAGGTGAGATCGAGGCTGTTGTTATCGCGACTGGTGTTCACACCTTCTTTGGAAAGGCTGCTCACTTGGTTGATAGCACAAATCAAGTGGGGCACTTCCAAAAGGTGTTGACTGCCATCGGAAACTTCTGCATTTGTTCGATCGCTCTGGGGATGGTGATAGAGTTAGTAGTGATGTATCCGATTCAACATCGTAGATATAGAGATGGGATTAACAATCTCTTGGTGCTTCTCATTGGGGGGATTCCAATTGCCATGCCAACAGTGTTGTCGGTCACGATGGCTATTGGTTCTCATAGGTTATCCCAGCAGGGTGCTATTACAAAGAGAATGACAGCCATTGAAGAGATGGCTGGCATGGATGTACTCTGCAGTGATAAGACTGGAACTCTAACTCTCAACAAGCTTACCGTAGACAAATCCATGATTGAGGTGTTTGTTAGAGATGTGGACAAAGATACTGTGGTTTTGCTTGGAGCTAGAGCTTCCAGGGTTGAAAATCAAGATGCTATTGATGCTTGCATCGTTGGGATGCTTGGTGATCCTAAGGAGGCCAGGGATGGCATAAAAGAGGTTCATTTCTTGCCCTTTAACCCAGTAGACAAGCGTACAGCTATTACATATATTGACAATGATGGAAACTGGCATCGAGTTAGCAAAGGAGCACCAGAGCAGATTATCGAGCTTTGCGACCTCCGTGAAGATGTAAAGAAGAAGGCTCATTCTATCATTGACAAATTCGCCGATCGCGGTCTTCGTTCTCTTGCTGTTTGCAGACAGGCGGTTCCAGAGAAGACCAAAGAAAGTCCAGGAGGACCATGGCAATTTGTTGGTCTCTTGCCTCTCTTTGATCCTCCAAGGCATGACAGTGCAGAGACAATTCGAAGGGCTCTTCATCTTGGTGTCAATGTTAAGATGATCACTGGTGACCAACTGGCGATTGGGAAGGAAACTGGCCGTAGGCTTGGAATGGGCACAAACATGTACCCATCTTCCTCACTTCTTGGACAAAGCAAGGACGAGTCAATTGCTTCCTTACCTATTGATGAGCTTATTGAGAAGGCTGATGGATTTGCAGGAGTCTTCCCCGAATTTGAATTCATAATTAAATTTTCCATTACCCATCAACTTATGCTTGTGCCACTGCTGATGTTGTTAAATGCAGAGCACAAATATGAAATTGTGAAGAGGCTTCAAGATAGGAAGCATATTTGTGGTATGACAGGAGATGGTGTGAATGATGCCCCAGCTTTGAAGAAGGCAGACATAGGAATTGCAGTTGCTGATGCAACTGATGCTGCAAGAGGTGCTTCCGATATAGTCTTGACAGAGCCAGGGCTTAGCGTGATCGTGAGCGCCGTTTTAACAAGCAGAGCCATTTTCCAGAGAATGAAGAACTACACCATCTACGCCGTTTCCATTACCATCCGTATCGTCTTGGGTTTTATGCTTCTAGCTCTCATTTGGAAGTTCGACTTCTCACCTTTCATGGTTTTGATCATAGCCATTCTCAATGATGGCACCATCATGACCATCTCTAAAGACAGAGTGAAACCTTCCCCTCTTCCCGACTCGTGGAAGCTCCGGGAGATTTTTGCCACTGGCGTTGTCTTGGGCTCCTACTTAGCAGTCATGACTGTTGTTTTCTTCTGGGTTGCTAATGCTACCGATTTCTTTTCGGACAAATTTGGTGTACGATCAATCAGAGAACATGGTGGAGAGCTCACAGCAGCTGTCTATCTTCAAGTCAGCACTGTCAGTCAGGCACTCATCTTCGTCACAAGATCCCGAAGCTGGTCGTTTGTCGAACGCCCTGGTCTACTCCTCGTGTTCGCTTTCTTCGTAGCACAGCTGGTGGCCACACTCATTGCTGTGTATGCGCACTGGGAGTTTGCAGGAATGAAGGGAATTGGATGGGGATGGGCAGGAGTGATCTGGCTCTACAGCATAATCTTCTACATCCCTCTTGATATTCTCAAGTTCGCCACTCGATACGCATTGAGCGGCAAGGCTTGGGATAACATTGTCCAAAACAAGACTGCTTTCACAACAAAGAAGGATTATGGCATTGGCGAGAGGGAAGCTCAATGGGCTGCAGCTCAGCGCACTCTTCACGGCCTACAGCCTCCTGAAACATCCGAGCTCTTCCATGACAAAAACAACTACAGGGAGCTGTCTGAGATCGCTGAGCAAGCCAAGAAGCGCGCTGAGGTTGCAAGGTTGAGGGAGCTACACACTCTGAAGGGGCATGTTGAATCGGTGGTGAAACTGAAGGGATTGGACATTGAAACAATCCAACAACACTACACTGTTTGA 2931 46.5 MTDISLEEIKNENIDLERIPVQEVFEQLKCSREGLSSEEGRKRLQLFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGQPPDWQDFVGITALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWCEEEAAILVPGDVISIKLGDIVPADARLLDGDPLKIDQSALTGESLPVTKNAGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIALGMVIELVVMYPIQHRRYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSMIEVFVRDVDKDTVVLLGARASRVENQDAIDACIVGMLGDPKEARDGIKEVHFLPFNPVDKRTAITYIDNDGNWHRVSKGAPEQIIELCDLREDVKKKAHSIIDKFADRGLRSLAVCRQAVPEKTKESPGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASLPIDELIEKADGFAGVFPEFEFIIKFSITHQLMLVPLLMLLNAEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYLAVMTVVFFWVANATDFFSDKFGVRSIREHGGELTAAVYLQVSTVSQALIFVTRSRSWSFVERPGLLLVFAFFVAQLVATLIAVYAHWEFAGMKGIGWGWAGVIWLYSIIFYIPLDILKFATRYALSGKAWDNIVQNKTAFTTKKDYGIGEREAQWAAAQRTLHGLQPPETSELFHDKNNYRELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7660825 7665919 + MC08g0955 Mch8g1083 694704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1083 976 CDD P-type_ATPase_H 34 866 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Mch8g1083 976 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Mch8g1083 976 PRINTS P-type cation-transporting ATPase superfamily signature 613 632 - -
Mch8g1083 976 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Mch8g1083 976 PRINTS P-type cation-transporting ATPase superfamily signature 636 648 - -
Mch8g1083 976 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Mch8g1083 976 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Mch8g1083 976 Gene3D - 341 488 IPR023299 GO:0000166(InterPro)
Mch8g1083 976 NCBIfam HAD-IC family P-type ATPase 101 349 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch8g1083 976 NCBIfam HAD-IC family P-type ATPase 592 698 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch8g1083 976 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Mch8g1083 976 Pfam haloacid dehalogenase-like hydrolase 325 627 - -
Mch8g1083 976 FunFam Plasma membrane ATPase 132 216 - -
Mch8g1083 976 Gene3D - 593 650 IPR023214 -
Mch8g1083 976 FunFam Plasma membrane ATPase 589 661 - -
Mch8g1083 976 Gene3D - 925 976 - -
Mch8g1083 976 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Mch8g1083 976 FunFam Plasma membrane ATPase 341 488 - -
Mch8g1083 976 Coils Coil 927 947 - -
Mch8g1083 976 Gene3D - 326 569 IPR023214 -
Mch8g1083 976 PANTHER CALCIUM-TRANSPORTING ATPASE 17 899 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Mch8g1083 976 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch8g1083 976 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch8g1083 976 PRINTS H+-transporting ATPase (proton pump) signature 785 806 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch8g1083 976 SUPERFAMILY HAD-like 322 667 IPR036412 -
Mch8g1083 976 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Mch8g1083 976 Pfam E1-E2 ATPase 131 308 - -
Mch8g1083 976 Gene3D - 94 325 - -
Mch8g1083 976 Gene3D - 132 216 - -
Mch8g1083 976 FunFam ATPase 4 plasma membrane-type 588 840 - -
Mch8g1083 976 SFLD C1.7: P-type atpase like 311 665 - -
Mch8g1083 976 FunFam ATPase 2, plasma membrane-type 482 588 - -
Mch8g1083 976 NCBIfam plasma-membrane proton-efflux P-type ATPase 34 575 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Mch8g1083 976 SFLD p-type atpase 311 665 IPR044492 -
Mch8g1083 976 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 872 IPR023298 -
Mch8g1083 976 Gene3D - 651 840 - -
Mch8g1083 976 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1083 Mch-Chr8:7660825 Mch8g2640 Mch-Chr8:29630087 0 dispersed
Mch6g0646 Mch-Chr6:4407177 Mch8g1083 Mch-Chr8:7660825 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1083 K01535 - csv:101212751 1737.62