Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1108 GGCCCCATCCCACTTGAATTGACCAATTTGACCCGCCTCAAGCTTCTGGACCTTCACGAAAACAGCCTCAACGGTTCCATTCCGGCTTCGCTCAACTGTTTAGCCGGCCTGCGGTCTTTGGACTTGAGCCGGAACAAGCTCTCCGGCTCGATCCCGACTTCTCTGGGGCTGCCTAACTTGAGGGTACTAGACCTGAGTCAGAATCTTCTCACCGGTTCGGTTCCGGCCGGGATCGCCACGTGTCGTTCTCTGATTAAATTGGATTTGAGTCGTAATCGTTTGACCGGGTTGATAACGGAGTCTATTGGTGGGCTTAGAGACCTTGTGCTTTTGGATCTCAGCTATAATCGAATCTCCGGCCCACTTCCGACGTCGTTTGGGCTTTTGGGCTCTCTGGAAGTTTTGATTCTCGAGGGAAATTCAATGGGCTGTGTTATTTCTGGCGATCTCTTTGATGGTATGATGGGCCTGATGACGTTGATTCTTTCCAACATGGGCTTCCACGGCTCAATTCCTGGCTCTTTGGGCCGAGTACCGAATCTTCGAGTACTACATCTTGATGGCAATCACTTCAATGGTTCAATTCCCTCCAGCTTTCAAGACTTGAAGAATCTAAATGACTTGAAACTCAACGACAATTTGCTAACCGGACCGATACCATTACGAAAGGAGATGATTTGGCAGATGAAGAGGAAGCTTAGATTGGATAATAACTTGGGGTTGTGTTACAACTCTGAGAGCGGGGTTGTGGACGTGTCGGGCTCGACGTATAATGTCGGTATTGGCCCATGTGATGTCCCGAGATTTGAACCGACTCGAACCACACAACATGTTTCCATGGATGGAGAAAATGTTGTAAGGAGCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTACAAAACGCATTGCCTCGGTCTGACCCCAAACCCCAACATTCGGCGAAACTCTCATTCAACTTTTTGCCAGCGAAATCAAAACGCAAACCCATTTCTTTCCCCTTTTCAAATGTTTGGAAGAAACAGCAAACGTGGAGGGTCTTCTCGTTGAAGGAATTACACTCTGCCACAAACAATTTTAATTATGATAACAAGCTTGGAGAAGGAGGATTTGGTAGTGTTTATTGGGGTCAGCTGTGGGATGGATCACAAATTGCAGTTAAGAGGTTGAAGGTTTGGAGCAACAAAGCGGATATGGAATTTTCCGTGGAAGTTGAGATACTGGCCCGAGTTAGGCACAAGAATCTATTGAGTTTACGTGGTTACTGTGCCGAAGGGCAGGAGCGTTTGATCGTGTATGACTACATGCCCAATCTAAGTCTACTCTCTCATCTACATGGACATCACTCGGCAGAAAGTCTTCTCGATTGGAAACGCCGAATGAAAATCGTTATTGGGTCTGCCGAGGGAATTGCCTATCTGCACCACCAAGCAACTCCACATATCATTCATCGAGACATCAAAGCTAGTAACGTTTTGCTCGATCCAGATTTTCAAGCTCGTGTAGCCGACTTCGGGTTCGCGAAACTCATCCCCGATGGTGCAACACATGTAACTACAAGAGTCAAGGGCACACTTGGATACCTCGCTCCGGAATATGCCATGCTAGGGAAGGCATCAGAGAGTTGTGACGTATACAGCTTTGGCATTCTCCTGCTCGAGCTGGCCACCGGCAAGAAACCCCTCGAGAAATTAAGCGCAACAATGAAACGCACAATCACGGACTGGGCATTGCCAATGGTAGTGGAGAAGAAGTTTGATGAACTTGCAGACCCAAAGCTAAATGGAGACTACAATGCAGGAGAGCTAAAGAGAGTCATCCTTGTCGCACTCATCTGTGCCCATTCACGACCCGAGAAACGACCCACAATGCTCGAGGTGGTGGAGCTGCTGAAAGGAGAATCAAAAGAGAAGGTAGCCAAGTTAGAAGACGATGAGATGTTCAAGAGCCATCAGGTAGGTGCTCAAGCTAAAGAAACAGCAGCTGGTGAAGATAGCTCAGACTTCATTTCAGAAGAAAAGGATTCAACACAAAACCCACATGACAGCAGCTTATCAGTCTACTAG 2061 47.6 GPIPLELTNLTRLKLLDLHENSLNGSIPASLNCLAGLRSLDLSRNKLSGSIPTSLGLPNLRVLDLSQNLLTGSVPAGIATCRSLIKLDLSRNRLTGLITESIGGLRDLVLLDLSYNRISGPLPTSFGLLGSLEVLILEGNSMGCVISGDLFDGMMGLMTLILSNMGFHGSIPGSLGRVPNLRVLHLDGNHFNGSIPSSFQDLKNLNDLKLNDNLLTGPIPLRKEMIWQMKRKLRLDNNLGLCYNSESGVVDVSGSTYNVGIGPCDVPRFEPTRTTQHVSMDGENVVRSPLSLSLSLSLQNALPRSDPKPQHSAKLSFNFLPAKSKRKPISFPFSNVWKKQQTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSAESLLDWKRRMKIVIGSAEGIAYLHHQATPHIIHRDIKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGKKPLEKLSATMKRTITDWALPMVVEKKFDELADPKLNGDYNAGELKRVILVALICAHSRPEKRPTMLEVVELLKGESKEKVAKLEDDEMFKSHQVGAQAKETAAGEDSSDFISEEKDSTQNPHDSSLSVY 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7826337 7833894 - MC08g0975 Mch8g1108 694729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1108 686 MobiDBLite consensus disorder prediction 663 677 - -
Mch8g1108 686 ProSiteProfiles Leucine-rich repeat profile. 36 58 IPR001611 GO:0005515(InterPro)
Mch8g1108 686 ProSiteProfiles Protein kinase domain profile. 358 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1108 686 PRINTS Leucine-rich repeat signature 57 70 - -
Mch8g1108 686 PRINTS Leucine-rich repeat signature 37 50 - -
Mch8g1108 686 SUPERFAMILY L domain-like 2 243 - -
Mch8g1108 686 CDD STKc_IRAK 364 631 - -
Mch8g1108 686 Pfam Leucine Rich repeats (2 copies) 37 70 IPR025875 -
Mch8g1108 686 Gene3D Ribonuclease Inhibitor 1 260 IPR032675 -
Mch8g1108 686 MobiDBLite consensus disorder prediction 641 686 - -
Mch8g1108 686 SMART serkin_6 358 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1108 686 SUPERFAMILY Protein kinase-like (PK-like) 335 629 IPR011009 -
Mch8g1108 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g1108 686 SMART LRR_typ_2 82 104 IPR003591 -
Mch8g1108 686 SMART LRR_typ_2 105 128 IPR003591 -
Mch8g1108 686 SMART LRR_typ_2 57 81 IPR003591 -
Mch8g1108 686 SMART LRR_typ_2 10 33 IPR003591 -
Mch8g1108 686 SMART LRR_typ_2 129 153 IPR003591 -
Mch8g1108 686 SMART LRR_typ_2 178 201 IPR003591 -
Mch8g1108 686 SMART LRR_typ_2 34 56 IPR003591 -
Mch8g1108 686 FunFam Leucine-rich repeat receptor protein kinase EMS1 56 149 - -
Mch8g1108 686 Gene3D Phosphorylase Kinase; domain 1 322 433 - -
Mch8g1108 686 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 101 238 IPR050647 -
Mch8g1108 686 Gene3D Transferase(Phosphotransferase) domain 1 434 648 - -
Mch8g1108 686 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524(InterPro)
Mch8g1108 686 FunFam PTI1-like tyrosine-protein kinase At3g15890 333 433 - -
Mch8g1108 686 Pfam Protein kinase domain 359 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1108 686 Pfam Leucine rich repeat 83 141 IPR001611 GO:0005515(InterPro)
Mch8g1108 686 FunFam PTI1-like tyrosine-protein kinase At3g15890 434 645 - -
Mch8g1108 686 Pfam Leucine Rich Repeat 180 202 IPR001611 GO:0005515(InterPro)
Mch8g1108 686 Pfam Leucine Rich Repeat 13 34 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g0557 Mch-Chr6:3768982 Mch8g1108 Mch-Chr8:7826337 3.87E-139 dispersed
Mch8g1108 Mch-Chr8:7826337 Mch9g2017 Mch-Chr9:21439862 1.54E-87 dispersed
Mch5g0308 Mch-Chr5:2090772 Mch8g1108 Mch-Chr8:7826337 6.16E-48 transposed
Mch6g0685 Mch-Chr6:4644318 Mch8g1108 Mch-Chr8:7826337 7.51E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77598 PF00069 Pkinase 5.70E-44 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1108 - - - 0.0