Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g1108 | GGCCCCATCCCACTTGAATTGACCAATTTGACCCGCCTCAAGCTTCTGGACCTTCACGAAAACAGCCTCAACGGTTCCATTCCGGCTTCGCTCAACTGTTTAGCCGGCCTGCGGTCTTTGGACTTGAGCCGGAACAAGCTCTCCGGCTCGATCCCGACTTCTCTGGGGCTGCCTAACTTGAGGGTACTAGACCTGAGTCAGAATCTTCTCACCGGTTCGGTTCCGGCCGGGATCGCCACGTGTCGTTCTCTGATTAAATTGGATTTGAGTCGTAATCGTTTGACCGGGTTGATAACGGAGTCTATTGGTGGGCTTAGAGACCTTGTGCTTTTGGATCTCAGCTATAATCGAATCTCCGGCCCACTTCCGACGTCGTTTGGGCTTTTGGGCTCTCTGGAAGTTTTGATTCTCGAGGGAAATTCAATGGGCTGTGTTATTTCTGGCGATCTCTTTGATGGTATGATGGGCCTGATGACGTTGATTCTTTCCAACATGGGCTTCCACGGCTCAATTCCTGGCTCTTTGGGCCGAGTACCGAATCTTCGAGTACTACATCTTGATGGCAATCACTTCAATGGTTCAATTCCCTCCAGCTTTCAAGACTTGAAGAATCTAAATGACTTGAAACTCAACGACAATTTGCTAACCGGACCGATACCATTACGAAAGGAGATGATTTGGCAGATGAAGAGGAAGCTTAGATTGGATAATAACTTGGGGTTGTGTTACAACTCTGAGAGCGGGGTTGTGGACGTGTCGGGCTCGACGTATAATGTCGGTATTGGCCCATGTGATGTCCCGAGATTTGAACCGACTCGAACCACACAACATGTTTCCATGGATGGAGAAAATGTTGTAAGGAGCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTACAAAACGCATTGCCTCGGTCTGACCCCAAACCCCAACATTCGGCGAAACTCTCATTCAACTTTTTGCCAGCGAAATCAAAACGCAAACCCATTTCTTTCCCCTTTTCAAATGTTTGGAAGAAACAGCAAACGTGGAGGGTCTTCTCGTTGAAGGAATTACACTCTGCCACAAACAATTTTAATTATGATAACAAGCTTGGAGAAGGAGGATTTGGTAGTGTTTATTGGGGTCAGCTGTGGGATGGATCACAAATTGCAGTTAAGAGGTTGAAGGTTTGGAGCAACAAAGCGGATATGGAATTTTCCGTGGAAGTTGAGATACTGGCCCGAGTTAGGCACAAGAATCTATTGAGTTTACGTGGTTACTGTGCCGAAGGGCAGGAGCGTTTGATCGTGTATGACTACATGCCCAATCTAAGTCTACTCTCTCATCTACATGGACATCACTCGGCAGAAAGTCTTCTCGATTGGAAACGCCGAATGAAAATCGTTATTGGGTCTGCCGAGGGAATTGCCTATCTGCACCACCAAGCAACTCCACATATCATTCATCGAGACATCAAAGCTAGTAACGTTTTGCTCGATCCAGATTTTCAAGCTCGTGTAGCCGACTTCGGGTTCGCGAAACTCATCCCCGATGGTGCAACACATGTAACTACAAGAGTCAAGGGCACACTTGGATACCTCGCTCCGGAATATGCCATGCTAGGGAAGGCATCAGAGAGTTGTGACGTATACAGCTTTGGCATTCTCCTGCTCGAGCTGGCCACCGGCAAGAAACCCCTCGAGAAATTAAGCGCAACAATGAAACGCACAATCACGGACTGGGCATTGCCAATGGTAGTGGAGAAGAAGTTTGATGAACTTGCAGACCCAAAGCTAAATGGAGACTACAATGCAGGAGAGCTAAAGAGAGTCATCCTTGTCGCACTCATCTGTGCCCATTCACGACCCGAGAAACGACCCACAATGCTCGAGGTGGTGGAGCTGCTGAAAGGAGAATCAAAAGAGAAGGTAGCCAAGTTAGAAGACGATGAGATGTTCAAGAGCCATCAGGTAGGTGCTCAAGCTAAAGAAACAGCAGCTGGTGAAGATAGCTCAGACTTCATTTCAGAAGAAAAGGATTCAACACAAAACCCACATGACAGCAGCTTATCAGTCTACTAG | 2061 | 47.6 | GPIPLELTNLTRLKLLDLHENSLNGSIPASLNCLAGLRSLDLSRNKLSGSIPTSLGLPNLRVLDLSQNLLTGSVPAGIATCRSLIKLDLSRNRLTGLITESIGGLRDLVLLDLSYNRISGPLPTSFGLLGSLEVLILEGNSMGCVISGDLFDGMMGLMTLILSNMGFHGSIPGSLGRVPNLRVLHLDGNHFNGSIPSSFQDLKNLNDLKLNDNLLTGPIPLRKEMIWQMKRKLRLDNNLGLCYNSESGVVDVSGSTYNVGIGPCDVPRFEPTRTTQHVSMDGENVVRSPLSLSLSLSLQNALPRSDPKPQHSAKLSFNFLPAKSKRKPISFPFSNVWKKQQTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSAESLLDWKRRMKIVIGSAEGIAYLHHQATPHIIHRDIKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGKKPLEKLSATMKRTITDWALPMVVEKKFDELADPKLNGDYNAGELKRVILVALICAHSRPEKRPTMLEVVELLKGESKEKVAKLEDDEMFKSHQVGAQAKETAAGEDSSDFISEEKDSTQNPHDSSLSVY | 686 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 7826337 | 7833894 | - | MC08g0975 | Mch8g1108 | 694729 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g1108 | 686 | MobiDBLite | consensus disorder prediction | 663 | 677 | - | - | |
Mch8g1108 | 686 | ProSiteProfiles | Leucine-rich repeat profile. | 36 | 58 | IPR001611 | GO:0005515(InterPro) | |
Mch8g1108 | 686 | ProSiteProfiles | Protein kinase domain profile. | 358 | 646 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch8g1108 | 686 | PRINTS | Leucine-rich repeat signature | 57 | 70 | - | - | |
Mch8g1108 | 686 | PRINTS | Leucine-rich repeat signature | 37 | 50 | - | - | |
Mch8g1108 | 686 | SUPERFAMILY | L domain-like | 2 | 243 | - | - | |
Mch8g1108 | 686 | CDD | STKc_IRAK | 364 | 631 | - | - | |
Mch8g1108 | 686 | Pfam | Leucine Rich repeats (2 copies) | 37 | 70 | IPR025875 | - | |
Mch8g1108 | 686 | Gene3D | Ribonuclease Inhibitor | 1 | 260 | IPR032675 | - | |
Mch8g1108 | 686 | MobiDBLite | consensus disorder prediction | 641 | 686 | - | - | |
Mch8g1108 | 686 | SMART | serkin_6 | 358 | 629 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch8g1108 | 686 | SUPERFAMILY | Protein kinase-like (PK-like) | 335 | 629 | IPR011009 | - | |
Mch8g1108 | 686 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 480 | 492 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch8g1108 | 686 | SMART | LRR_typ_2 | 82 | 104 | IPR003591 | - | |
Mch8g1108 | 686 | SMART | LRR_typ_2 | 105 | 128 | IPR003591 | - | |
Mch8g1108 | 686 | SMART | LRR_typ_2 | 57 | 81 | IPR003591 | - | |
Mch8g1108 | 686 | SMART | LRR_typ_2 | 10 | 33 | IPR003591 | - | |
Mch8g1108 | 686 | SMART | LRR_typ_2 | 129 | 153 | IPR003591 | - | |
Mch8g1108 | 686 | SMART | LRR_typ_2 | 178 | 201 | IPR003591 | - | |
Mch8g1108 | 686 | SMART | LRR_typ_2 | 34 | 56 | IPR003591 | - | |
Mch8g1108 | 686 | FunFam | Leucine-rich repeat receptor protein kinase EMS1 | 56 | 149 | - | - | |
Mch8g1108 | 686 | Gene3D | Phosphorylase Kinase; domain 1 | 322 | 433 | - | - | |
Mch8g1108 | 686 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 101 | 238 | IPR050647 | - | |
Mch8g1108 | 686 | Gene3D | Transferase(Phosphotransferase) domain 1 | 434 | 648 | - | - | |
Mch8g1108 | 686 | ProSitePatterns | Protein kinases ATP-binding region signature. | 364 | 386 | IPR017441 | GO:0005524(InterPro) | |
Mch8g1108 | 686 | FunFam | PTI1-like tyrosine-protein kinase At3g15890 | 333 | 433 | - | - | |
Mch8g1108 | 686 | Pfam | Protein kinase domain | 359 | 626 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch8g1108 | 686 | Pfam | Leucine rich repeat | 83 | 141 | IPR001611 | GO:0005515(InterPro) | |
Mch8g1108 | 686 | FunFam | PTI1-like tyrosine-protein kinase At3g15890 | 434 | 645 | - | - | |
Mch8g1108 | 686 | Pfam | Leucine Rich Repeat | 180 | 202 | IPR001611 | GO:0005515(InterPro) | |
Mch8g1108 | 686 | Pfam | Leucine Rich Repeat | 13 | 34 | IPR001611 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch6g0557 | Mch-Chr6:3768982 | Mch8g1108 | Mch-Chr8:7826337 | 3.87E-139 | dispersed | |
Mch8g1108 | Mch-Chr8:7826337 | Mch9g2017 | Mch-Chr9:21439862 | 1.54E-87 | dispersed | |
Mch5g0308 | Mch-Chr5:2090772 | Mch8g1108 | Mch-Chr8:7826337 | 6.16E-48 | transposed | |
Mch6g0685 | Mch-Chr6:4644318 | Mch8g1108 | Mch-Chr8:7826337 | 7.51E-61 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77598 | PF00069 | Pkinase | 5.70E-44 | CL0016 | Mch | PK |
Pathway information
