Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1129 ATGGCGAAGCAAAAGAAGTTCAGAGGAGTGAGGCAACGCCGGTGGGGCTCATGGGTCTCTGAGATTCGCCACCCTTTTTTAAAGAGGAGGGTCTGGCTAGGGACGTTTGAGACTGCCGAAGACGCGGCCAGAGCCTACGACGAGGCTGCCGTTCTGATGAGCGGTCGAACTGCCAAGACCAACTTTCCGTTGGCCGTGGCAGCCACCGACATTGTTAGAGACACTACTATCTCAAGTGCAGTTTTGCCGCCGTTATCATCAATTCTCAACGCCAAACTTCGAAAGTTTTGCGAATCTTCGCCGCCTTCCCTAACTTGCCTCCGTCTCGACACCGCGAGTTGCCGCATCGGCGTCTGGCAGAGGCATGCGGGACGTCGTCGAGTGGCCAAATCTAACTGGGTTATGATGGTTGAGCTTGAGAAGAAGAAGAACGACGACGGATTACGAGTGACGATGGAGTCGTCAGATAAGGCCGGTGTGGAGGAGTTGAAATTATCAGGTGCCAGAGAGAGTTCAGATGATGAAGAAAGAGCTACTCTACAGATGATTGAAGAACTTCTGAAT 564 52.48 MAKQKKFRGVRQRRWGSWVSEIRHPFLKRRVWLGTFETAEDAARAYDEAAVLMSGRTAKTNFPLAVAATDIVRDTTISSAVLPPLSSILNAKLRKFCESSPPSLTCLRLDTASCRIGVWQRHAGRRRVAKSNWVMMVELEKKKNDDGLRVTMESSDKAGVEELKLSGARESSDDEERATLQMIEELLN 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8077157 8077982 + MC08g0992 Mch8g1129 694750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1129 188 CDD AP2 5 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1129 188 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Mch8g1129 188 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1129 188 MobiDBLite consensus disorder prediction 151 178 - -
Mch8g1129 188 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1129 188 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1129 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 141 IPR050913 -
Mch8g1129 188 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1129 188 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1129 188 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Mch8g1129 188 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1129 Mch-Chr8:8077157 Mch9g0455 Mch-Chr9:3388481 2.51E-26 dispersed
Mch11g0559 Mch-Chr11:3591294 Mch8g1129 Mch-Chr8:8077157 7.69E-62 wgd
Mch6g0721 Mch-Chr6:4958144 Mch8g1129 Mch-Chr8:8077157 7.06E-56 wgd
Mch8g1129 Mch-Chr8:8077157 Mch8g3079 Mch-Chr8:33261065 3.49E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43848 PF00847 AP2 2.60E-12 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1129 - - - 0.0