Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1173 ATGCAGGAGAAGAAAGAAAATTCGAGAATGGATTTCTGGCCGGAGTTCCTCGCCAGCAGCTGGGGGAAAGAGTTCGTCGCCGGCGGGATCGGCGGCGCCGCGGGTATTGTATCCGGCTACCCACTCGACACCCTTCGCGTCCGTCAGCAGCACTCCACCTCCGGCTCCGCCTTCAGCGTCCTCCGTAACATCGTCTCCAACGGCGGCCCCGCTGCCCTCTACAGAGGCATGGGAGCGCCACTCGCTTCCGTCACTTTTCAGAACGCCATTGTTTTCCAGACGAACGCCGTGCTGTGCCGGGCGTTCGATCCGGCGGCGACGGAGAACCGGCCACCGTCGTACAAAGCGGTAGCATTAGGGGGATTCGGAACCGGAGCTCTGCAGAGCCTAATTCTGACGCCGGTGGAGCTCGTGAAAATCCGGCTTCAGCTACAGGATTCGAATTCCTCGAGCCACGCAGATCTGGGGTCGTCGTCGTCGTCCCGGCCGGGGCCGATGAAAGTGGCGAAGAACATTTTCAGAAGCGAAGGATACAGAGGACTTTACAGAGGCTTGACCATAACGATGCTCAGAGACGCGCCTTCGCACTGCTTCTACTTTTTGACTTACGAATACATGAGGGAGAAGCTTCACCCTGGCTGCCGGATGACCGGCGAAGAGACGGTGAGGACGATGCTGGTCGCCGGCGGGCTTGCCGGCGTCGCCAGCTGGGTCTGCTGCTACCCACTGGACGTCGTGAAAACCAGACTTCAGGCTCAGTCCAAATTCTCGTTTCAAAAGTACTCTGGAATTGCGGATTGCCTTTACAAGAGCGTCAAGGAAGAAGGGTACAGCGTATTGTATCGTGGATTGGGGACCGCCATTGCCAGAGCTTTTGTGGTGAATGGAGCTATTTTCTCTGCGTATGAGCTCAGCTTGAGGTGTCTGTCCAGTAATGGAGGACTTCACGCCGAGAATACGATCTAA 966 57.25 MQEKKENSRMDFWPEFLASSWGKEFVAGGIGGAAGIVSGYPLDTLRVRQQHSTSGSAFSVLRNIVSNGGPAALYRGMGAPLASVTFQNAIVFQTNAVLCRAFDPAATENRPPSYKAVALGGFGTGALQSLILTPVELVKIRLQLQDSNSSSHADLGSSSSSRPGPMKVAKNIFRSEGYRGLYRGLTITMLRDAPSHCFYFLTYEYMREKLHPGCRMTGEETVRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSKFSFQKYSGIADCLYKSVKEEGYSVLYRGLGTAIARAFVVNGAIFSAYELSLRCLSSNGGLHAENTI 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8361000 8363891 + MC08g1030 Mch8g1173 694794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1173 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 308 IPR018108 -
Mch8g1173 321 Pfam Mitochondrial carrier protein 20 96 IPR018108 -
Mch8g1173 321 Pfam Mitochondrial carrier protein 222 310 IPR018108 -
Mch8g1173 321 Pfam Mitochondrial carrier protein 118 210 IPR018108 -
Mch8g1173 321 Gene3D Mitochondrial carrier domain 22 314 IPR023395 -
Mch8g1173 321 SUPERFAMILY Mitochondrial carrier 20 303 IPR023395 -
Mch8g1173 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 19 101 IPR018108 -
Mch8g1173 321 PRINTS Mitochondrial carrier protein signature 127 145 IPR002067 GO:0055085(InterPro)
Mch8g1173 321 PRINTS Mitochondrial carrier protein signature 24 37 IPR002067 GO:0055085(InterPro)
Mch8g1173 321 PRINTS Mitochondrial carrier protein signature 182 200 IPR002067 GO:0055085(InterPro)
Mch8g1173 321 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085(InterPro)
Mch8g1173 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 209 IPR018108 -
Mch8g1173 321 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 17 311 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2173 Mch-Chr6:24095548 Mch8g1173 Mch-Chr8:8361000 1.08E-46 dispersed
Mch8g1173 Mch-Chr8:8361000 Mch9g0134 Mch-Chr9:1030793 1.65E-24 dispersed
Mch5g1956 Mch-Chr5:19447650 Mch8g1173 Mch-Chr8:8361000 8.26E-27 transposed
Mch8g1173 Mch-Chr8:8361000 Mch9g0346 Mch-Chr9:2568182 2.11E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1173 K15109 - csv:101222749 554.673