Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1180 AGATCCGACGAAGATTTTGAGGGTGGAGGAGTGCATGAAGAAGATGAAGATGGGGATCAAGGATGTCACGTGAAGAAAAGGAAGAAATATCATCGGCATACCGCCGAGCAGATCCGAGAAATGGAGGCGCTGTTTAAAGAGTCACCGCACCCAGATGAGAAGCAAAGGCAGCAGCTGAGCAAGCGATTAGGCCTTTCTCCGAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAAGCTATTCAAGAGCGCCATGAAAATGCATTGTTAAAATCTGAGATGGACAAACTCCGAGAGGAGAATAAAGCCATGAGAAAGATTGCCAAGAATAAAGCTGGTTGCCCGAACTGTGGCGCCACAGATGTTGGCAGCGGAGACCACACCGCATTGACGACTACAGAGCAACTGCGTATTAAGAATGCCAAACTCAAAGCTGAGGTTGAAAGACTACGAGCCGCGCTGGGGAAATACCCAGCAGCAGCTGCCTCTCCTTCATACTCAACGGGAAATGAACAAGAGAACAGAAGTTGCTTAGATTTTTACACTGGAATTTTCGGGCTGGAGAAGTCAAGGATCATGGACAAGGTTAATCAAGCACTGGAAGAGCTCAAAACAATGGCTACCGCGCCTGAACCACTTTGGCACCGGAGTGTCGAGACCGGAAGAGAAATATTAAACTACGATGAGTACTTGAAAACATTCCATCTCACGAACTCAAGCAACAATTGGTTAAAGAGACACATCGAAGCCTCTCGAGAGACCACGGTTGTCTTCATGGAGCCCTCGCGACTGGTTCAAAGCTTCATGGACGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCAAAAGCCGCTACAGTTGATGTTATTTGTAATGGAGAAGTTGCCTATTGGAATGGCGCAGTGCAATTGATGTTTGCAGAGGTGCAGATGCTTACACCATTGGTGCCCACCAGAGAAATGTATTTCGTCCGCCATTGCAAGCAGCTCGATGCTGAACGTTGGGCAATCGTTGATGTTTCAATCGAAAACGTCGAAGATAATAATATGGATGCAGCCTTGGTGAAATGCAGAAAATGCCCTTCTGGTTGCATCATTAAGGATGAATCTAATGGGCATTGCAAGGTAACAATGGTGGAGCACTTGGAATTGGAGAAAAGCACAGCAGTTCATAACTTGTACCGCAGCATAGTGAATAATGGGACTGCCTTCGGAGCAAGACATTGGATGGCCACACTCCAACTCCAATGCGAGCGCCTAGCTTTCTCCATGGCCACCAACATTCCCATCAAAGACTCCATAGGAGTGGCAACACTGGCTGGAAGAAAAAGCACTTTAAAGTTGGCACAGAGAATGAGTTGGAGCTTCTCCCAAGCAGTTGCAGCTTCAAGCTATCAAACATGGAGCAAAGTGGTGGGGAAAACTGGGGAAGATATTAGGGTTTGCTCGAGGAAGAATCTGAGTGACCCTGGAGAACCCATTGGGGTGATTCTTTGTGCAGTTTCTTCTCTCTGGCTCCCTGTTTCTCCTCACCTTCTCTTCCATTTCTTGAGAGACGAAGCTCGCAGAAATGAGTGGGATGCCATGTTCGGTGGGGAAAAGGCTCAGTTGATTGCAAACTTGGCTAAAGGACAAGATAGAGGCAACGCAGTTACCATTCAGACCATTGGAGCAAAAGAGAGCAGCAGCGTATGGATCCTCCAAGACAGCTCCACAAACGCGTCGGAATCCATGGTGGTCTACTCCGGAGTAGACGTCGTCGGCATCCAGTCGGTGATCACCGGCTGCGACTCCGGCAGCGTCTCCATCCTGCCGTCGGGGTTTTCCATTCTCCCCGACGGGGCTGAGTCCCGGCCCCTCCTCATCACTCGCCGGAACAAAGACGACGACAAAACCGCGGAAGCACAAGGCGGCGCTCTGCTCACCGCCGCCGTCCAGATCCTCACCGACGGCTCTCCCACATCCAAACCGACCATGGAATCCGTTGAGTACGTTAAAAGCATCATATCGTGTACGCTCAAAAATATCAGAACCAGCATGGGCTGTGAGGATGACTGA 2070 49.18 RSDEDFEGGGVHEEDEDGDQGCHVKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENALLKSEMDKLREENKAMRKIAKNKAGCPNCGATDVGSGDHTALTTTEQLRIKNAKLKAEVERLRAALGKYPAAAASPSYSTGNEQENRSCLDFYTGIFGLEKSRIMDKVNQALEELKTMATAPEPLWHRSVETGREILNYDEYLKTFHLTNSSNNWLKRHIEASRETTVVFMEPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEVAYWNGAVQLMFAEVQMLTPLVPTREMYFVRHCKQLDAERWAIVDVSIENVEDNNMDAALVKCRKCPSGCIIKDESNGHCKVTMVEHLELEKSTAVHNLYRSIVNNGTAFGARHWMATLQLQCERLAFSMATNIPIKDSIGVATLAGRKSTLKLAQRMSWSFSQAVAASSYQTWSKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPVSPHLLFHFLRDEARRNEWDAMFGGEKAQLIANLAKGQDRGNAVTIQTIGAKESSSVWILQDSSTNASESMVVYSGVDVVGIQSVITGCDSGSVSILPSGFSILPDGAESRPLLITRRNKDDDKTAEAQGGALLTAAVQILTDGSPTSKPTMESVEYVKSIISCTLKNIRTSMGCEDD 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8383741 8388571 - MC08g1037 Mch8g1180 694801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1180 689 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 686 IPR042160 -
Mch8g1180 689 SUPERFAMILY Homeodomain-like 15 85 IPR009057 -
Mch8g1180 689 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677(InterPro)
Mch8g1180 689 ProSiteProfiles START domain profile. 188 426 IPR002913 GO:0008289(InterPro)
Mch8g1180 689 SMART HOX_1 26 88 IPR001356 GO:0003677(InterPro)
Mch8g1180 689 CDD START_ArGLABRA2_like 192 422 - -
Mch8g1180 689 Gene3D - 12 97 - -
Mch8g1180 689 SUPERFAMILY Bet v1-like 467 655 - -
Mch8g1180 689 CDD homeodomain 27 82 IPR001356 GO:0003677(InterPro)
Mch8g1180 689 Coils Coil 83 110 - -
Mch8g1180 689 Gene3D - 199 424 IPR023393 -
Mch8g1180 689 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch8g1180 689 SUPERFAMILY Bet v1-like 190 424 - -
Mch8g1180 689 Pfam Homeodomain 27 82 IPR001356 GO:0003677(InterPro)
Mch8g1180 689 MobiDBLite consensus disorder prediction 1 62 - -
Mch8g1180 689 FunFam Homeobox-leucine zipper protein HDG1 12 100 - -
Mch8g1180 689 Coils Coil 136 156 - -
Mch8g1180 689 SMART START_1 197 423 IPR002913 GO:0008289(InterPro)
Mch8g1180 689 MobiDBLite consensus disorder prediction 34 59 - -
Mch8g1180 689 FunFam Homeobox-leucine zipper protein GLABRA 2 197 422 - -
Mch8g1180 689 Pfam START domain 201 423 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1180 Mch-Chr8:8383741 Mch8g2240 Mch-Chr8:25551823 7.06E-126 dispersed
Mch8g1180 Mch-Chr8:8383741 Mch9g0333 Mch-Chr9:2507278 1.89E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43852 PF01852 START 8.30E-55 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1180 K09338 - csv:101221341 1099.73