Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1192 GACCACTTCGCTGTCGACGAATATCTCTTGGACTTCTCGAATGAAGATGTGGCAATGACCAGCGGTTTCTTCGATAATGTCGCCGGAAATTCAAGTGATTCATCGACGGTTACTGCGGTTGAGAGCTGCAATTCCTCGGTCTCCGGCGGCGACAATCGGCTGTCGGGGAATTTTGGCTCCGGGAGCTTGTGTGAAGCTCAATTCTCGAGCGAGCTCTGCATTCCGTGCGACGATTTGGCCGAGCTCGAATGGCTCTCGAATTTCGTGGAAGATTCATTTTCGACGGAGGAGATTGATAAGAATCTTCACGCGGTTCGCTTCCCGCCTACGACGTCGTCGTCCGTTCACGGAAGTGCGAAAACGACATCGTTTTTCCAGGACGAAGCGCTGGCTCTCCCCGGCAAGGCCCGCAGCAAGCGCTCACGCGCTTCTCCATGCGACTGGTCGACGCGCCTCCTCCATATGGCAGCTCCGGCGAAAACGAAGGGAGAGAGTTCGAACGCCGAAACGTCGTGCCGGAAGTGCCTGCATTGCGCGGCGGAGAAGACGCCGCAGTGGCGGACTGGGCCCATGGGCCCGAAAACGCTGTGCAACGCTTGTGGGGTCCGGTACAAGTCGGGTCGGCTCGTACCCGAATACCGACCCGCGGCGAGCCCGACATTCGTGTCGACGAAGCACTCGAATTCCCACCGGAAGGTGATGGAGCTCCGACGGCAGAAGGAGGAGCAGTTTCTGAGTGAAAGTTCAATATTCGGGAGATCGAACGGCTGTAATGAGTTCTTGATCCACCGTCGCAACGGCGGTGATTTCAGTCACATGATG 822 57.18 DHFAVDEYLLDFSNEDVAMTSGFFDNVAGNSSDSSTVTAVESCNSSVSGGDNRLSGNFGSGSLCEAQFSSELCIPCDDLAELEWLSNFVEDSFSTEEIDKNLHAVRFPPTTSSSVHGSAKTTSFFQDEALALPGKARSKRSRASPCDWSTRLLHMAAPAKTKGESSNAETSCRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVMELRRQKEEQFLSESSIFGRSNGCNEFLIHRRNGGDFSHMM 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8474987 8475888 + MC08g1048 Mch8g1192 694813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1192 274 Gene3D - 165 243 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch8g1192 274 SMART GATA_3 169 219 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1192 274 Pfam GATA zinc finger 175 209 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1192 274 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1192 274 FunFam GATA transcription factor 165 250 - -
Mch8g1192 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 233 - -
Mch8g1192 274 CDD ZnF_GATA 174 221 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1192 274 PIRSF Txn_fac_GATA_plant 1 255 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Mch8g1192 274 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1192 274 PANTHER GATA TRANSCRIPTION FACTOR 3 242 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1192 Mch-Chr8:8474987 Mch9g1787 Mch-Chr9:19755869 5.52E-41 dispersed
Mch7g0890 Mch-Chr7:13461372 Mch8g1192 Mch-Chr8:8474987 7.82E-39 transposed
Mch8g1192 Mch-Chr8:8474987 Mch9g0313 Mch-Chr9:2348359 3.04E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43853 PF00320 GATA 1.50E-14 CL0167 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1192 - - - 0.0