Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g1192 | GACCACTTCGCTGTCGACGAATATCTCTTGGACTTCTCGAATGAAGATGTGGCAATGACCAGCGGTTTCTTCGATAATGTCGCCGGAAATTCAAGTGATTCATCGACGGTTACTGCGGTTGAGAGCTGCAATTCCTCGGTCTCCGGCGGCGACAATCGGCTGTCGGGGAATTTTGGCTCCGGGAGCTTGTGTGAAGCTCAATTCTCGAGCGAGCTCTGCATTCCGTGCGACGATTTGGCCGAGCTCGAATGGCTCTCGAATTTCGTGGAAGATTCATTTTCGACGGAGGAGATTGATAAGAATCTTCACGCGGTTCGCTTCCCGCCTACGACGTCGTCGTCCGTTCACGGAAGTGCGAAAACGACATCGTTTTTCCAGGACGAAGCGCTGGCTCTCCCCGGCAAGGCCCGCAGCAAGCGCTCACGCGCTTCTCCATGCGACTGGTCGACGCGCCTCCTCCATATGGCAGCTCCGGCGAAAACGAAGGGAGAGAGTTCGAACGCCGAAACGTCGTGCCGGAAGTGCCTGCATTGCGCGGCGGAGAAGACGCCGCAGTGGCGGACTGGGCCCATGGGCCCGAAAACGCTGTGCAACGCTTGTGGGGTCCGGTACAAGTCGGGTCGGCTCGTACCCGAATACCGACCCGCGGCGAGCCCGACATTCGTGTCGACGAAGCACTCGAATTCCCACCGGAAGGTGATGGAGCTCCGACGGCAGAAGGAGGAGCAGTTTCTGAGTGAAAGTTCAATATTCGGGAGATCGAACGGCTGTAATGAGTTCTTGATCCACCGTCGCAACGGCGGTGATTTCAGTCACATGATG | 822 | 57.18 | DHFAVDEYLLDFSNEDVAMTSGFFDNVAGNSSDSSTVTAVESCNSSVSGGDNRLSGNFGSGSLCEAQFSSELCIPCDDLAELEWLSNFVEDSFSTEEIDKNLHAVRFPPTTSSSVHGSAKTTSFFQDEALALPGKARSKRSRASPCDWSTRLLHMAAPAKTKGESSNAETSCRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVMELRRQKEEQFLSESSIFGRSNGCNEFLIHRRNGGDFSHMM | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 8474987 | 8475888 | + | MC08g1048 | Mch8g1192 | 694813 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g1192 | 274 | Gene3D | - | 165 | 243 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Mch8g1192 | 274 | SMART | GATA_3 | 169 | 219 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch8g1192 | 274 | Pfam | GATA zinc finger | 175 | 209 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch8g1192 | 274 | ProSitePatterns | GATA-type zinc finger domain. | 175 | 200 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch8g1192 | 274 | FunFam | GATA transcription factor | 165 | 250 | - | - | |
Mch8g1192 | 274 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 173 | 233 | - | - | |
Mch8g1192 | 274 | CDD | ZnF_GATA | 174 | 221 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch8g1192 | 274 | PIRSF | Txn_fac_GATA_plant | 1 | 255 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Mch8g1192 | 274 | ProSiteProfiles | GATA-type zinc finger domain profile. | 169 | 205 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch8g1192 | 274 | PANTHER | GATA TRANSCRIPTION FACTOR | 3 | 242 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch8g1192 | Mch-Chr8:8474987 | Mch9g1787 | Mch-Chr9:19755869 | 5.52E-41 | dispersed | |
Mch7g0890 | Mch-Chr7:13461372 | Mch8g1192 | Mch-Chr8:8474987 | 7.82E-39 | transposed | |
Mch8g1192 | Mch-Chr8:8474987 | Mch9g0313 | Mch-Chr9:2348359 | 3.04E-115 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43853 | PF00320 | GATA | 1.50E-14 | CL0167 | Mch | TF |
Pathway information
