Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1192 GACCACTTCGCTGTCGACGAATATCTCTTGGACTTCTCGAATGAAGATGTGGCAATGACCAGCGGTTTCTTCGATAATGTCGCCGGAAATTCAAGTGATTCATCGACGGTTACTGCGGTTGAGAGCTGCAATTCCTCGGTCTCCGGCGGCGACAATCGGCTGTCGGGGAATTTTGGCTCCGGGAGCTTGTGTGAAGCTCAATTCTCGAGCGAGCTCTGCATTCCGTGCGACGATTTGGCCGAGCTCGAATGGCTCTCGAATTTCGTGGAAGATTCATTTTCGACGGAGGAGATTGATAAGAATCTTCACGCGGTTCGCTTCCCGCCTACGACGTCGTCGTCCGTTCACGGAAGTGCGAAAACGACATCGTTTTTCCAGGACGAAGCGCTGGCTCTCCCCGGCAAGGCCCGCAGCAAGCGCTCACGCGCTTCTCCATGCGACTGGTCGACGCGCCTCCTCCATATGGCAGCTCCGGCGAAAACGAAGGGAGAGAGTTCGAACGCCGAAACGTCGTGCCGGAAGTGCCTGCATTGCGCGGCGGAGAAGACGCCGCAGTGGCGGACTGGGCCCATGGGCCCGAAAACGCTGTGCAACGCTTGTGGGGTCCGGTACAAGTCGGGTCGGCTCGTACCCGAATACCGACCCGCGGCGAGCCCGACATTCGTGTCGACGAAGCACTCGAATTCCCACCGGAAGGTGATGGAGCTCCGACGGCAGAAGGAGGAGCAGTTTCTGAGTGAAAGTTCAATATTCGGGAGATCGAACGGCTGTAATGAGTTCTTGATCCACCGTCGCAACGGCGGTGATTTCAGTCACATGATG 822 57.18 DHFAVDEYLLDFSNEDVAMTSGFFDNVAGNSSDSSTVTAVESCNSSVSGGDNRLSGNFGSGSLCEAQFSSELCIPCDDLAELEWLSNFVEDSFSTEEIDKNLHAVRFPPTTSSSVHGSAKTTSFFQDEALALPGKARSKRSRASPCDWSTRLLHMAAPAKTKGESSNAETSCRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSTKHSNSHRKVMELRRQKEEQFLSESSIFGRSNGCNEFLIHRRNGGDFSHMM 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8474987 8475888 + MC08g1048 Mch8g1192 694813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1192 274 Gene3D - 165 243 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch8g1192 274 SMART GATA_3 169 219 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1192 274 Pfam GATA zinc finger 175 209 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1192 274 ProSitePatterns GATA-type zinc finger domain. 175 200 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1192 274 FunFam GATA transcription factor 165 250 - -
Mch8g1192 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 233 - -
Mch8g1192 274 CDD ZnF_GATA 174 221 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1192 274 PIRSF Txn_fac_GATA_plant 1 255 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Mch8g1192 274 ProSiteProfiles GATA-type zinc finger domain profile. 169 205 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1192 274 PANTHER GATA TRANSCRIPTION FACTOR 3 242 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1192 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1192 Mch-Chr8:8474987 Mch9g1787 Mch-Chr9:19755869 5.52E-41 dispersed
Mch7g0890 Mch-Chr7:13461372 Mch8g1192 Mch-Chr8:8474987 7.82E-39 transposed
Mch8g1192 Mch-Chr8:8474987 Mch9g0313 Mch-Chr9:2348359 3.04E-115 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0323 . 115 399 C2C2-Gata Transcription Factor Family AT5G25830 55.1 6.5e-71 264.6
Mch11g0766 . 83 352 C2C2-Gata Transcription Factor Family AT5G25830 52.0 1.7e-66 250.0
Mch8g1192 . 68 241 C2C2-Gata Transcription Factor Family AT2G45050 50.2 4.1e-44 175.3
Mch10g0751 . 27 316 C2C2-Gata Transcription Factor Family AT5G66320 51.0 7.1e-65 244.6
Mch1g1560 . 104 269 C2C2-Gata Transcription Factor Family AT4G36240 52.8 4.3e-40 161.8
Mch11g0766 . 71 351 C2C2-Gata Transcription Factor Family AT4G32890 51.0 6.9e-59 224.6
Mch10g1588 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 53.7 5.8e-135 478.0
Mch6g2117 . 1 518 C2C2-Gata Transcription Factor Family AT4G17570 52.4 3.2e-133 472.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013047 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43853 PF00320 GATA 1.50E-14 CL0167 Mch TF