Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1232 ATGCTTTCGCCTCAATCAGCTCAAGGTTATGATCAGTTTCAGGCAGAGGTTGACCTTCTCATAAGGGTTCATCACAGAAATTTGACTGCCCTGGTTGGATATTGTGATGAATCAACAAATAAAGGACTCATCTACGAATACATGGGAAGAGGGAACTTGGGATCTCTCATTTCAAGTGACAGATCAAAGGTTTTGAAATGGGAAGATAGACTCCATATAGCCTTGGATTCAGCACATGGATTTGAGTACCTTCACCACGGTATCAAACCAGCAATTATACATAGAGATGTAAAATCTTCAAACATCTTATTGGACAACGATTTTCGAGCAAAAGTGTCCGATTTTGGGCTGTCAAGAACTTTTCCTGCTGAAAATGGCGCCACTCATGTGACAGCCACCAATGTAGTTGGCACCCATGGTTACATTGACCCAGAATACTACACCACATACAGATTAAACGGGAAGAGTGACGTTTATGGATTTGGAGTGATTCTTTTGGAGATCATAACAGGAAAACCAGCTTTAACAAGGATTGGAGACCAGGTAACTCACGTCTATCAATGGGTTGAGCCGTTGCTTTCGCAGGGTGATATCGGATCAATAATCGACCCGAAAATGAAAGAAGATTTGAACGTAAACTCTGTTTGGAAAGCAGTTGATGTAGCAATCTCTTGTATGTCTTCAAAATCAATAGATAGGCCAAACATGAGCCAAGTTGTGGTGGACTTGAAGGAATGCTTGGCCATGGAATTAGCTGGTGATAAGAATCGCCAACCTGAAACAGCTGCTGCAGAATCCACGGCTCTAACTGGCCCCTTCGCGAGGTAG 828 42.75 MLSPQSAQGYDQFQAEVDLLIRVHHRNLTALVGYCDESTNKGLIYEYMGRGNLGSLISSDRSKVLKWEDRLHIALDSAHGFEYLHHGIKPAIIHRDVKSSNILLDNDFRAKVSDFGLSRTFPAENGATHVTATNVVGTHGYIDPEYYTTYRLNGKSDVYGFGVILLEIITGKPALTRIGDQVTHVYQWVEPLLSQGDIGSIIDPKMKEDLNVNSVWKAVDVAISCMSSKSIDRPNMSQVVVDLKECLAMELAGDKNRQPETAAAESTALTGPFAR 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8851928 8853901 + MC08g_new0163 Mch8g1232 694853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1232 275 Pfam Protein tyrosine and serine/threonine kinase 8 242 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g1232 275 Gene3D Phosphorylase Kinase; domain 1 1 48 - -
Mch8g1232 275 MobiDBLite consensus disorder prediction 255 275 - -
Mch8g1232 275 PANTHER OS07G0107800 PROTEIN-RELATED 1 251 - -
Mch8g1232 275 SMART serkin_6 5 247 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1232 275 SUPERFAMILY Protein kinase-like (PK-like) 7 243 IPR011009 -
Mch8g1232 275 Gene3D Transferase(Phosphotransferase) domain 1 49 267 - -
Mch8g1232 275 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 48 256 - -
Mch8g1232 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 92 104 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g1232 275 ProSiteProfiles Protein kinase domain profile. 1 247 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1232 275 PIRSF ILK 3 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1232 Mch-Chr8:8851928 Mch8g1234 Mch-Chr8:8867655 6.05E-113 dispersed
Mch8g1232 Mch-Chr8:8851928 Mch8g1233 Mch-Chr8:8863792 1.86E-132 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77602 PF07714 PK_Tyr_Ser-Thr 3.90E-35 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1232 - - - 0.0