Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1236 ATGGATGATTTGCTTTGGAATGGCTCATGGAGCGGCGGAGGAGACGATGGCGGTTGTGAAGAAAACTTATTCATCTCGGACCCGAGTTGTTGTTCGAGTCCGCCATTAAAGGAGCTTCAAACAGTTGCAGAAATATTGGGGTTGCCGGAGATTAATACTTCGGCATCGGACATGGGTTCGATGGCGCTTCGGAAACCAGCCGGAGTGGTGGATCTCAAGCTTTTATGTGACCGGGGAAATTCCTGGCCGGCCGGAGCTAGCTCCGGTGGACTTTTGTTGGAAGAGCTTGAAAATGACAAAGGAAGAACTGCACCAGAGAGTGGATCTTGGGACATTTTTGAGAACCCAAAACCAAAACAACAAAATCCCATCTCAGAGAAACAACCAAGCTCAGCCAATTACAATGGCTTCCAACAGCCATCAAATTCATCTCCATCCCCGTCTTCTTCGAACAACAACGACGTCGAGCCAGCTGGTCGAGAGGCAGGCATGGCACGGATGAAGGCAATGATGTATCATGCAGCAGCATTCAGACCGGTGAACTTAGGGTTGGAGACAGTGGAGAAGAAGAGGAGGAGGAACGTGAAAACGTCGAAGGAGCCGCAGACCGTGGCGGCGAGAAAACGGAGGGAGAAAATAAGCGAGAAAATTAGGGTTTTGCAGAGGTTGGTTCCGGGTGGGAGCAAGATGGACACTGCCTCCATGCTTGATGAGGCTGCAAGTTACCTCAAGTTCCTTAGGGAACAGGTCAAAGCAATGGAAGACTTAAGCTACAAACTTGGCTCTCTTGATTGTCTCTCAAATTGCACTTCTTTTTCTTTCAACTCCACAAGTGCTTTTCCCACAAGTGCTTATTTTCCTCTCTAA 867 48.79 MDDLLWNGSWSGGGDDGGCEENLFISDPSCCSSPPLKELQTVAEILGLPEINTSASDMGSMALRKPAGVVDLKLLCDRGNSWPAGASSGGLLLEELENDKGRTAPESGSWDIFENPKPKQQNPISEKQPSSANYNGFQQPSNSSPSPSSSNNNDVEPAGREAGMARMKAMMYHAAAFRPVNLGLETVEKKRRRNVKTSKEPQTVAARKRREKISEKIRVLQRLVPGGSKMDTASMLDEAASYLKFLREQVKAMEDLSYKLGSLDCLSNCTSFSFNSTSAFPTSAYFPL 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8893080 8894897 - MC08g1072 Mch8g1236 694857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1236 288 MobiDBLite consensus disorder prediction 190 210 - -
Mch8g1236 288 SMART finulus 203 252 IPR011598 GO:0046983(InterPro)
Mch8g1236 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 260 IPR036638 GO:0046983(InterPro)
Mch8g1236 288 CDD bHLH_AtIND_like 198 257 - -
Mch8g1236 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983(InterPro)
Mch8g1236 288 MobiDBLite consensus disorder prediction 114 156 - -
Mch8g1236 288 Pfam Helix-loop-helix DNA-binding domain 205 247 IPR011598 GO:0046983(InterPro)
Mch8g1236 288 Gene3D - 196 263 IPR036638 GO:0046983(InterPro)
Mch8g1236 288 MobiDBLite consensus disorder prediction 101 158 - -
Mch8g1236 288 Coils Coil 236 256 - -
Mch8g1236 288 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 115 276 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1236 Mch-Chr8:8893080 Mch9g0913 Mch-Chr9:7244657 2.90E-10 dispersed
Mch8g1236 Mch-Chr8:8893080 Mch9g0278 Mch-Chr9:2081253 5.18E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43857 PF00010 HLH 4.40E-06 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1236 - - - 0.0