Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1250 ATGGAAATGGAGGGAAAGCAGATGTTCTTCCACGGCACGCTTGAAGTTACCGTCTTCCATGCGACAGCATACACACCACCATCGCCTCTGGATTGCTTATTTTCAGGAGGAAGGCGAACCTATGTGACTGTCAAGATAGATAACAAAGAGGTTGCCCAGACGAGCCATGAATACGACCGTGTTTGGAACCAGACATTCCAAATTCTTTGTGCGTATCCATCAACTTCTACAGTCACCATTACAATGAAAACATCTCGTTCTGTCTTGGGTAAATTCCACATCCAAGCCCAACAGATTTTGAAAGAAGCAAGTTTCATGAATGGTTTCTTCCCGCTTACTATGGAAAATGGGAAGCCTAGCCCGGAGCTCAGACTTCGATTCATGCTATGGTTTAAACCGGCTGTATACGAATTAAGCTGGAAAAAGATGCTAGGAAATGGAGAGTACAAAGGGCTGAGGAATGCAACATTTCCTCTAAGGTCCAATTGTCATGTGACTCTATATCAAGATGCTCACCACCTCCCTACTTTTCAACCTCCGTTTCACAGTTCGAGTTCACCAAGAAGGCTATGGGAAGATGTATACAAGGCCATAGATAATGCAAAGCATTTGATTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGTTGCTGGTAAGGGATTCTCAGACTGACATACCATATGCTTTAGGAGTAAAGCTTGGTGAGCTGTTGAAGCAGAAGGCAGAGGAAGGTGTAGCTGTGAGGATAATGATATGGGACGATGCAACATCCCTTCCCATCATCAAGAATGCCGGGATAATGAAAACACGTGACGAAGATGCTTGGGCATATTTCTCACATTCGAAAGTTATATGTAGGTTGTGCCCCAAATTACACCCTATGGCCCCACCAATTTTCTCTCACCATCAGAAAACCATAACTGTAGATGCTCAAGCACACATAAATGCACGAAACAGGGAGATTATGAGTTTCATTGGGGGTTTAGATCTTTGTGATGGTCGCTATGATACCGAACAACACTCGTTGTTCCACACTTTGAATATGGAATCCCACTGCGGTGATTTCTATCAGACAAGTATATCAGGTGCCAAGCTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCACGCTTGTGTAACAGGTGAGGCTGCTTGGGATATATTAACAAACTTCGAGCAACGATGGACTAAGCAATCAGACGCTTCACTCTTAGTCCCCACGAGCATCTTATTAAATCTGATGCCCCAGCTTGAAACAAACACCAACCCACAAAATGATTGGAACGTGCAAGTTTTTCGATCTATTGACCACTTGTCTGCCAGCCAAGTGTTCAGAAACTTGACGGTTGAACGAACCATCCACGAAGCTTATGTTGAAGCCATCAGGCGAGCAGAGAGATTTATTTACATCGAAAACCAATATTTCATAGGAGGGTGCCACTTGTGGGACAAAGATCAGCATTGCGGATGCACGAATTTGATACCGATCGAAATTGCACTCAAGGTGGCTAATAAGATCAAGGCAAGGGAGAGATTTGCAGTTTATATAGTGATACCAATGTGGCCAGAAGGACCTCCAGAGAGTGAATCAGTTGCGGAAATGCTACATTGGACTAGGCAGACAATGAAAATGATGTATAAACTTATTGGAGAAGCCATCCAAGAAACTGGGGAGAAGGCCCACCCAAGAGACTACTTGAATTTCTTTTGCCTTGCAAACAGAGAAGAAGAGGGAGAATGGGACTTTGTTCCACCGCACAGTCCTGAACGAGCAACTCAGTACTGGAATGCCCAACAACATAGGAGGTTCATGGTCTATGTCCATTCCAAGGTCATGATAGTGGACGATTTGTACATTCTGATCGGATCGGCAAACGTAAACCAGAGATCCATGGACGGAGGGCGAGACACAGAAATTGCAATCGGATGCTTCCAACAGGAAAAAGATGCAGAAGAGATGCCAAATGGAAGAGACATTTCTACATTCCGATTGTCGCTTTGGTATGAACATACGCGACGCTTCGAAGAACTGTTCTTAAACCCCGAAACCTTGGATTGCGTTCAAAGGGTTCGTTCAATAGCAGACGAATCGTGGAGAATTTACAGCGGAGAAGAAGCTGCAGACATGGAAGGGGTTCACCTCGTGGCATACCCTGTGAAGGTGAATCAGGAGGGATCGGTGGAGGATTTGGAAGAAAACGGAGGCCATTTTCCTGACACCAAATGCCCCATTAAAGGAAGAAGATCGATGCTCTTGCCGCCCATTTTCACGACCTAG 2286 44.93 MEMEGKQMFFHGTLEVTVFHATAYTPPSPLDCLFSGGRRTYVTVKIDNKEVAQTSHEYDRVWNQTFQILCAYPSTSTVTITMKTSRSVLGKFHIQAQQILKEASFMNGFFPLTMENGKPSPELRLRFMLWFKPAVYELSWKKMLGNGEYKGLRNATFPLRSNCHVTLYQDAHHLPTFQPPFHSSSSPRRLWEDVYKAIDNAKHLIYIAGWSFNPKMLLVRDSQTDIPYALGVKLGELLKQKAEEGVAVRIMIWDDATSLPIIKNAGIMKTRDEDAWAYFSHSKVICRLCPKLHPMAPPIFSHHQKTITVDAQAHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNMESHCGDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWDILTNFEQRWTKQSDASLLVPTSILLNLMPQLETNTNPQNDWNVQVFRSIDHLSASQVFRNLTVERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQHCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGPPESESVAEMLHWTRQTMKMMYKLIGEAIQETGEKAHPRDYLNFFCLANREEEGEWDFVPPHSPERATQYWNAQQHRRFMVYVHSKVMIVDDLYILIGSANVNQRSMDGGRDTEIAIGCFQQEKDAEEMPNGRDISTFRLSLWYEHTRRFEELFLNPETLDCVQRVRSIADESWRIYSGEEAADMEGVHLVAYPVKVNQEGSVEDLEENGGHFPDTKCPIKGRRSMLLPPIFTT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9021699 9025368 + MC08g1085 Mch8g1250 694871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1250 761 SUPERFAMILY Phospholipase D/nuclease 142 408 - -
Mch8g1250 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 129 IPR035892 -
Mch8g1250 761 Pfam Phospholipase D C terminal 678 750 IPR024632 -
Mch8g1250 761 Gene3D Endonuclease Chain A 445 656 - -
Mch8g1250 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Mch8g1250 761 Gene3D Endonuclease Chain A 171 432 - -
Mch8g1250 761 Pfam C2 domain 12 109 IPR000008 -
Mch8g1250 761 PANTHER PHOSPHOLIPASE D 38 744 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Mch8g1250 761 Gene3D C2 domain 2 131 IPR035892 -
Mch8g1250 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824(InterPro)
Mch8g1250 761 SMART pld_4 300 335 IPR001736 GO:0003824(InterPro)
Mch8g1250 761 SMART pld_4 606 633 IPR001736 GO:0003824(InterPro)
Mch8g1250 761 SUPERFAMILY Phospholipase D/nuclease 425 690 - -
Mch8g1250 761 Pfam Phospholipase D Active site motif 609 633 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1250 Mch-Chr8:9021699 Mch8g2800 Mch-Chr8:31001624 6.31E-18 dispersed
Mch8g1250 Mch-Chr8:9021699 Mch8g1128 Mch-Chr8:8063013 3.47E-201 transposed
Mch8g1250 Mch-Chr8:9021699 Mch9g0416 Mch-Chr9:3077031 3.69E-201 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1250 K01115 - csv:101206396 1436.4