Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1263 ATGATTAAAGGTTTGCTGTTTCAACAAGAAGAAGTAGTTCAGGCCATGGAGGAAAATTTGTCAAATTTAACTTCAGCTTCCGGTGAAGCCAGCGCCTGCTCCGGCAACCGGGCCGATCAGCTTCCGGCCAACTATTCCGGCCAGTACTTTTCCGCCCCACCGCCCCCCAAGAAGAAGAGAAACCTCCCCGGGAATCCAGACCCGGATGCGGAAGTAATAGCGCTATCTCCGAAGGCGCTATTGGCGACAAACAGATTCTTGTGCGAGATCTGCAACAAGGGGTTTCAGAGGGATCAAAATCTTCAGCTGCACAGGAGAGGGCACAATCTGCCATGGAAGCTGAAGCAAAGAGCAAACAAAGAGGTGATAAGGAAGAAGGTTTATGTGTGCCCAGAGACAAGCTGTGTGCACCATGACCCATCAAGGGCATTGGGGGACTTGACTGGAATCAAGAAGCACTTTTGCAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAGTGCTCCAAGAGGTATGCAGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCGAGGAGGGATAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGCCATTACATCATCATCACCACCAAACCCAATCCTCCTAATGGCCAATCAAAACCCTCCACCTCTAATCTCTCACTTAAACACCTTCCAAAACCATCCCCATTTCACCCCTCTAGACCACATCCCCTCATTTCCCCTCAAAAAAGAACCACCACTACAAAACTCAAGCAATTTCATCCCCCCTTGGCTTGATGATCATCATCATCAAAACAACAACAACAGCAACAATGGTGTCCCCACAAGCACTTCTCTCCACCTTCCTTCTCCTCACATGTCAGCCACAGCGCTTCTCCAGAAAGCAGCTCAAATGGGCGCTACCATGAGCAGCAACAGCAACAATCCACCTGCTGATCAGTCCATTACAAGCTGTAATTTTGGGCTTCATTTGTCCTCCTCCACTGCCACTGCTGCTGCTGCTGCTGCAGCTCTGCCACCCTACAGGAACAGTTTCTGTGAAGACGCGTTTGGTGGGATTTCAAGAGCAGCTGCAGCGGCTGAAGATGGTAATTTGAGTACTAGAGATTTCTTGGGGCTCAGAGCCATTTCCCACAGTGAGTTTTTGAACAATATTGCAGCTTATAGTAACTGCATCAATGTGGCTCAGACGACAACCAATTCCCAAACTCAAATTCAAAAGCCCTGGCAAGGTTAG 1311 48.13 MIKGLLFQQEEVVQAMEENLSNLTSASGEASACSGNRADQLPANYSGQYFSAPPPPKKKRNLPGNPDPDAEVIALSPKALLATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITSSSPPNPILLMANQNPPPLISHLNTFQNHPHFTPLDHIPSFPLKKEPPLQNSSNFIPPWLDDHHHQNNNNSNNGVPTSTSLHLPSPHMSATALLQKAAQMGATMSSNSNNPPADQSITSCNFGLHLSSSTATAAAAAAALPPYRNSFCEDAFGGISRAAAAAEDGNLSTRDFLGLRAISHSEFLNNIAAYSNCINVAQTTTNSQTQIQKPWQG 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9149053 9152008 - MC08g1097 Mch8g1263 694884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1263 436 Gene3D Classic Zinc Finger 82 109 - -
Mch8g1263 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Mch8g1263 436 Coils Coil 6 26 - -
Mch8g1263 436 FunFam protein indeterminate-domain 12-like 65 134 - -
Mch8g1263 436 FunFam protein indeterminate-domain 5, chloroplastic-like 141 220 - -
Mch8g1263 436 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 189 228 - -
Mch8g1263 436 Pfam Zinc finger, C2H2 type 86 108 IPR013087 -
Mch8g1263 436 MobiDBLite consensus disorder prediction 44 69 - -
Mch8g1263 436 MobiDBLite consensus disorder prediction 282 308 - -
Mch8g1263 436 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Mch8g1263 436 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 162 186 - -
Mch8g1263 436 SMART c2h2final6 128 158 IPR013087 -
Mch8g1263 436 SMART c2h2final6 163 183 IPR013087 -
Mch8g1263 436 SMART c2h2final6 86 108 IPR013087 -
Mch8g1263 436 SUPERFAMILY beta-beta-alpha zinc fingers 85 183 IPR036236 -
Mch8g1263 436 Gene3D Classic Zinc Finger 122 211 - -
Mch8g1263 436 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 411 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch8g1263 436 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 124 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0417 Mch-Chr11:2625387 Mch8g1263 Mch-Chr8:9149053 9.42E-105 dispersed
Mch3g0484 Mch-Chr3:8720085 Mch8g1263 Mch-Chr8:9149053 4.93E-99 dispersed
Mch5g1758 Mch-Chr5:18158748 Mch8g1263 Mch-Chr8:9149053 6.43E-108 dispersed
Mch8g1263 Mch-Chr8:9149053 Mch9g0770 Mch-Chr9:5767274 7.49E-96 dispersed
Mch9g0902 Mch-Chr9:7090729 Mch8g1263 Mch-Chr8:9149053 3.53E-105 transposed
Mch8g1263 Mch-Chr8:9149053 Mch9g0247 Mch-Chr9:1857760 3.83E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43859 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1263 K25870 - csv:101204728 542.347