Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1280 GGCGGCCGCCCGCCCAACTGCGGCCATCCGGCGCTGAAATTGACCTGCGAGGGAGGCAACACCACCATAGATTTAATGGAAGTCAAATACCAAATCCTGAAATTCAGCGCCGATTCCCAAATTCTCACCATCGCCAGAGCCGATTACATGGACGGCCTCTGCCCTAACAAATTCGTCAACACCACTCTCGATTACAATCTCTTCGATTCAATTCCCGGCTATCGGAACATCACGTTGATCTATTGCTCTTCTCCGATTGAACAAGTCGCCGGACAATTTAGCTGTACTGAATATAACTTCGGCATAATTCAAGTGGACACCGCCGCCGGCCCTGGGCTCTGCAATGCGAGCGTGATTACGCCGGTCAATTTGGATTCTGTGGCGACGGTGAGCGCTCTTGTGAACTCTTCGGAGATTTTAAACGCCATTAAAGAGGGATTCGAGGTGCGATTGAAGGAGGACGGCGGCGGATGTAGAGTTTGTGAGGCGTCGGAGGGGGTTTGCGGTTACGACCTCGGTTCGAATCGGACGACTTGCTTCTGTCGTGGCGGTGATTGCTCCGCCGTGTTCAGATGCGGAGAGACGTCCGACATCGGCTTCCCGTTCTGGGGCGGAGATCGTCCGATGAGTTGTGGGGTTCCTGAACTGAAACTCACCTGCGACGATAACGTCACCGGAATCGAGATCATGCAAGTCAAGTATAGTGTTTTGCAGATGAATCCGAGCACTCAAACGCTCCGAATCGCAAGGGCGGACTATTTGAACGGAATATGCCCAAAAACCCAGCTGAAGAACACGACCCTGGACCCAAATGTGTTCGAAATGGGCAATGGATACATTAATATGACGCTACTTTATGGGTGCGATTCATCTGTTTTGGTAGTTCCCCCGCAGCTGAGATTCGCGTGCCCTGTTCATGGAGATGGGTGCGTGAAGTTTGGAGAAGAAATGGGGCTGTGGCTCTGCAAAACCAGCGTGGTGGTTCCGGTTGGTGGGGACGAGGGGCTTTTGGTGGGAGTTTTGGAGATGGAGGAAGCCATTAGAGAAGGGTTTGAGGTCAAATGGAAGGTGGAGATTGGGGGTTGTGGTGGTGGCTGTGTGGAGTCCGGCGGCGTTTGTGGCTATGATTTGAAGCGCCGCCGTGGGATTTGCTTGTGTCAGAGTGGGTCTCCTTCTAATTCTCCGGTGAATGGTTGCCGGAGTGGCGGCGGCATCCACCACCACCAAGCGTCCGCGTCTGCCTGCAGCAATAACTTCATCTGCGGCGAAACCACCGCCGTCGGGTTCCCGTTCTGGGGCGGCGGCCGCCCGGCCAACTGCGGCCATCCGGCGCTGAAATTGACTTGCGTGGGAGGCAACACCACCATAGATATAATGGAAGTCAAATACCAAATCCTGAAATTCAGCGCCGATTCCCAAATTCTCACCATCGCCAGAGCCGATTACATGGACGGCCTCTGCCCTAACAAATTCGTCAACACCACTCTCGATTACAATCTCTTCGATTCAATTCCCGGCTATCGGAACATCACGTTGATCTATTGCTCTTCTCCGATTGAACAAGTCGCCGGACAATTTAGCTGTACTGAATATAACTTCGGCATAATTCAAGTGGACACCGCCGCCGGCCCTGGGCTCTGCAATGCGAGCGTGATTACGCCGGTCAATTTGGATTCTGTGGCGACGGTGAGCGCTCTTGTGAACTCTACGGAGATTTTAAACGCCATTAAAGAGGGGTTCGAGGTGCGATTGAAGGAGGACGGCGGCGGATGTAGAGTTTGTGAGGCGTCGGAGGGTGTTTGCGGTTACGACCTCGGTTCGAATCGGACGACTTGCTTCTGTCGTGGCGGTGGTAATGGTGGTGTAAGAAGTTGCCGGAATATGCCGGCCGGCGAAGGTCCGGCGTCTTCTCCGGGTCTTTCTATAGGAGGGGCAGCTGTATTAGGCCTATTCTTAGGATGCTGTGTCTTCTCTATTACACAACGAAAGAAGAAACATGTCCTGAAGTTGAAAACCAAAGATCTTCCTTCGCCTCCTTCAAGTGCAGGCATTCCGACTCCCTCGACATTTCTCTCTCACAGTATTCCTTCCTATCCTTATTCAAGATCCAATCCCGAGAAAGGGAGCTCCTACTTTGGAGCTCAAGTCTTTACTTATGCAGAACTTGAGGAAGCAACTAACAATTTTGACCGTTCAAGGGAGCTTGGAGATGGAGGTTATGGTACCGTTTACTCTGGAACACTCAAGGATGGGCGGATAGTTGCAGTAAAGCGCCTATATGAAAACAACTGCAAACGCGTGGAGCAGTTCATGAATGAAGTGGAGATTCTATCACGACTGCATCACCCAAACCTTGTTAAGCTTTACGGATGCACATCAAGACATAGTCAGGGACTCCTTCTAGTATATGAGTACATTCCTAATGGAACAGTGGCGGATCATCTGCATGGAAACCGAGCTAATTCAGGTTTGCTCAGTTGGTCCGTTCGGCTGAAGATCGCTATCGAGACTGCTAATGCACTTGCTTACCTCCATCGCAACGATATCATTCATCGCGACGTCAAAACCAATAACATTCTCCTAGATCACAACTTCAAAGTGAAAGTGGCTGATTTCGGCCTATCGCGGTTATTTCCTGTCGATGTAACTCATGTTTCAACTGCTCCTCAGGGGACACCAGGCTATGTTGATCCTGAATATTATCAGTGCTACCAACTTACAGATAAAAGCGATGTGTATAGCTTTGGAGTAGTTTTGGTTGAGCTTATATCGTCGCTGCAAGCAGTGGACATCAACAGGAAGAGAAACGATATAAATTTGTCGAATATGGCTATCGATAGAATTCAAAATCATGCTTTAGGTGAATTAGTAGATTCAGAACTTGGGTTTGAGAGGGACTATGCAGTAAGGTCCATGATAACATCAGTGGCAGAGTTGGCTTTTCGATGCCTTCAACAGGCACGGGATCTACGGCCTTCGATGGATGACGTGCTGGAAGTTCTGAGAGAAGTGGAGAATGAAGAACTGGCTGCTCGTAAAGCAGAAGTGTTGGATATAGGGTCTGATAATGTAAGGCTTTTAAGGAATACATCATCTCTGCTTTCACCAGATTCCGAACCTGTGACAGATAAATGGACGAAGGTCTTGAACAGAACAGCTTAA 3162 49.94 GGRPPNCGHPALKLTCEGGNTTIDLMEVKYQILKFSADSQILTIARADYMDGLCPNKFVNTTLDYNLFDSIPGYRNITLIYCSSPIEQVAGQFSCTEYNFGIIQVDTAAGPGLCNASVITPVNLDSVATVSALVNSSEILNAIKEGFEVRLKEDGGGCRVCEASEGVCGYDLGSNRTTCFCRGGDCSAVFRCGETSDIGFPFWGGDRPMSCGVPELKLTCDDNVTGIEIMQVKYSVLQMNPSTQTLRIARADYLNGICPKTQLKNTTLDPNVFEMGNGYINMTLLYGCDSSVLVVPPQLRFACPVHGDGCVKFGEEMGLWLCKTSVVVPVGGDEGLLVGVLEMEEAIREGFEVKWKVEIGGCGGGCVESGGVCGYDLKRRRGICLCQSGSPSNSPVNGCRSGGGIHHHQASASACSNNFICGETTAVGFPFWGGGRPANCGHPALKLTCVGGNTTIDIMEVKYQILKFSADSQILTIARADYMDGLCPNKFVNTTLDYNLFDSIPGYRNITLIYCSSPIEQVAGQFSCTEYNFGIIQVDTAAGPGLCNASVITPVNLDSVATVSALVNSTEILNAIKEGFEVRLKEDGGGCRVCEASEGVCGYDLGSNRTTCFCRGGGNGGVRSCRNMPAGEGPASSPGLSIGGAAVLGLFLGCCVFSITQRKKKHVLKLKTKDLPSPPSSAGIPTPSTFLSHSIPSYPYSRSNPEKGSSYFGAQVFTYAELEEATNNFDRSRELGDGGYGTVYSGTLKDGRIVAVKRLYENNCKRVEQFMNEVEILSRLHHPNLVKLYGCTSRHSQGLLLVYEYIPNGTVADHLHGNRANSGLLSWSVRLKIAIETANALAYLHRNDIIHRDVKTNNILLDHNFKVKVADFGLSRLFPVDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLVELISSLQAVDINRKRNDINLSNMAIDRIQNHALGELVDSELGFERDYAVRSMITSVAELAFRCLQQARDLRPSMDDVLEVLREVENEELAARKAEVLDIGSDNVRLLRNTSSLLSPDSEPVTDKWTKVLNRTA 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9295705 9313020 - MC08g1112 Mch8g1280 694901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1280 1053 Pfam Wall-associated receptor kinase C-terminal 94 183 IPR032872 -
Mch8g1280 1053 Pfam Wall-associated receptor kinase C-terminal 527 616 IPR032872 -
Mch8g1280 1053 Pfam Wall-associated receptor kinase C-terminal 321 388 IPR032872 -
Mch8g1280 1053 ProSiteProfiles Protein kinase domain profile. 729 1009 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1280 1053 FunFam Wall-associated receptor kinase-like 20 806 1014 - -
Mch8g1280 1053 SUPERFAMILY Protein kinase-like (PK-like) 706 1003 IPR011009 -
Mch8g1280 1053 ProSitePatterns Serine/Threonine protein kinases active-site signature. 849 861 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g1280 1053 Gene3D Phosphorylase Kinase; domain 1 702 805 - -
Mch8g1280 1053 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 411 1046 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Mch8g1280 1053 CDD STKc_IRAK 735 1001 - -
Mch8g1280 1053 SMART serkin_6 729 1001 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1280 1053 Pfam Protein kinase domain 730 999 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1280 1053 Gene3D Transferase(Phosphotransferase) domain 1 806 1017 - -
Mch8g1280 1053 ProSitePatterns Protein kinases ATP-binding region signature. 735 757 IPR017441 GO:0005524(InterPro)
Mch8g1280 1053 Pfam Wall-associated receptor kinase galacturonan-binding 415 479 IPR025287 GO:0030247(InterPro)
Mch8g1280 1053 Pfam Wall-associated receptor kinase galacturonan-binding 186 250 IPR025287 GO:0030247(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1165 Mch-Chr1:14092234 Mch8g1280 Mch-Chr8:9295705 3.14E-88 dispersed
Mch3g1615 Mch-Chr3:17992372 Mch8g1280 Mch-Chr8:9295705 3.77E-196 dispersed
Mch6g0392 Mch-Chr6:2598248 Mch8g1280 Mch-Chr8:9295705 1.13E-151 dispersed
Mch6g1488 Mch-Chr6:14274369 Mch8g1280 Mch-Chr8:9295705 1.50E-71 dispersed
Mch8g0737 Mch-Chr8:5214703 Mch8g1280 Mch-Chr8:9295705 1.15E-81 dispersed
Mch8g1280 Mch-Chr8:9295705 Mch9g1937 Mch-Chr9:20851598 1.95E-142 dispersed
Mch11g0014 Mch-Chr11:126025 Mch8g1280 Mch-Chr8:9295705 4.86E-68 transposed
Mch4g2625 Mch-Chr4:26441720 Mch8g1280 Mch-Chr8:9295705 4.57E-218 transposed
Mch6g0923 Mch-Chr6:6498503 Mch8g1280 Mch-Chr8:9295705 1.20E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77607 PF00069 Pkinase 5.10E-49 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1280 - - - 0.0