Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1294 TTTCCACTTTCGCCCCTTAAATACCCTCTTGTACTTTCGTTCTCAAATCCTGAAAACTCTTTTTCCCCCAATTTCTCTCTCTCTCTCTGGTTCTTCTTCGGATTTTATGCTTCAATTCTGCCATTGTTGTTGCTCAAAATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGCGAAAATTGCAGTATTCGCCCCTGTTTGCACTGGATTAAGAGCCCTGAATCTCAGGCCAACGCCACCGTTTTTCTCGCCAAGTTCTACGGCCGCGCCGGCCTTATGAACCTCATCAACGCCGGTCCTGACCATCTCCGCCCTGCGATCTTTAGATCTCTGCTGTACGAGGCTTGCGGCCGGATTGTGAATCCGATTTACGGATCGGTAGGGTTGTTGTGGTCCGGGAGTTGGCAGCTCTGTCAGGCCGCCGTCGAGGCGGTGCTTAAAGGCGCTCCGATCACGCCGATAAACTCCGAAGCGGCGGCTACCGGCGATGGACCGCCGCTCAAGGCCTATGACATTCGTCACGTTTCCAAGGATGAGAACTCTGCCGCCTCCAACGACGGCGGAGTCCACCGCCGAGTCAAGACTCGGTGCCGGTTCAAGCGGTCGGTCGTCAAGCCGAAAGCGAGTAAAGGACTCGCCTCCGTCGTTGAGTCGACTCGGGGATTGTGCTCCACTGAGTTGAACCGGTCGTCGAGCGGCGAGTCGTCGCTGAGTCACCAATCCGACTCGCCGCACCTCGAGAACGAGAGCAAAGAGACGGAGAGCATGATCTCGGTGGAGACGATTTCTCCTCCTCCGCCGTCGTCGGCGCTTTTCCGATCGGAGTCGACTTCGGTGCCGAAAACCACCGCCAACGGCGGAGCAACTGCAGAAAGTGAATTAGCTCTAGAGCTGACCCTGGGAATTGAGCCGGTGTCGCGTGCCCAGCACGTGATTCCAATGAAGAAGCGGAAGATAGAGGCCGACGGTGGGTTCAGGCCCAGTAACGACGCGTGCAATACGGTTTTGGGCCTGGATTTTGCAGCCTAA 1041 55.81 FPLSPLKYPLVLSFSNPENSFSPNFSLSLWFFFGFYASILPLLLLKMRMSCNGCRVLRKGCSENCSIRPCLHWIKSPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASNDGGVHRRVKTRCRFKRSVVKPKASKGLASVVESTRGLCSTELNRSSSGESSLSHQSDSPHLENESKETESMISVETISPPPPSSALFRSESTSVPKTTANGGATAESELALELTLGIEPVSRAQHVIPMKKRKIEADGGFRPSNDACNTVLGLDFAA 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9423086 9424545 - MC08g1125 Mch8g1294 694915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1294 346 PIRSF AS2 47 337 IPR017414 -
Mch8g1294 346 Pfam Lateral organ boundaries (LOB) domain 50 148 IPR004883 -
Mch8g1294 346 MobiDBLite consensus disorder prediction 259 292 - -
Mch8g1294 346 MobiDBLite consensus disorder prediction 230 292 - -
Mch8g1294 346 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 47 307 - GO:0010468(PANTHER)
Mch8g1294 346 ProSiteProfiles LOB domain profile. 49 155 IPR004883 -
Mch8g1294 346 MobiDBLite consensus disorder prediction 230 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0355 Mch-Chr11:2185633 Mch8g1294 Mch-Chr8:9423086 7.30E-51 dispersed
Mch1g1274 Mch-Chr1:14957182 Mch8g1294 Mch-Chr8:9423086 1.03E-50 dispersed
Mch8g1294 Mch-Chr8:9423086 Mch9g1958 Mch-Chr9:20983539 6.64E-64 dispersed
Mch8g1294 Mch-Chr8:9423086 Mch6g0374 Mch-Chr6:2484246 5.25E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43861 PF03195 LOB 2.40E-24 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1294 - - - 0.0