Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1294 TTTCCACTTTCGCCCCTTAAATACCCTCTTGTACTTTCGTTCTCAAATCCTGAAAACTCTTTTTCCCCCAATTTCTCTCTCTCTCTCTGGTTCTTCTTCGGATTTTATGCTTCAATTCTGCCATTGTTGTTGCTCAAAATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGCGAAAATTGCAGTATTCGCCCCTGTTTGCACTGGATTAAGAGCCCTGAATCTCAGGCCAACGCCACCGTTTTTCTCGCCAAGTTCTACGGCCGCGCCGGCCTTATGAACCTCATCAACGCCGGTCCTGACCATCTCCGCCCTGCGATCTTTAGATCTCTGCTGTACGAGGCTTGCGGCCGGATTGTGAATCCGATTTACGGATCGGTAGGGTTGTTGTGGTCCGGGAGTTGGCAGCTCTGTCAGGCCGCCGTCGAGGCGGTGCTTAAAGGCGCTCCGATCACGCCGATAAACTCCGAAGCGGCGGCTACCGGCGATGGACCGCCGCTCAAGGCCTATGACATTCGTCACGTTTCCAAGGATGAGAACTCTGCCGCCTCCAACGACGGCGGAGTCCACCGCCGAGTCAAGACTCGGTGCCGGTTCAAGCGGTCGGTCGTCAAGCCGAAAGCGAGTAAAGGACTCGCCTCCGTCGTTGAGTCGACTCGGGGATTGTGCTCCACTGAGTTGAACCGGTCGTCGAGCGGCGAGTCGTCGCTGAGTCACCAATCCGACTCGCCGCACCTCGAGAACGAGAGCAAAGAGACGGAGAGCATGATCTCGGTGGAGACGATTTCTCCTCCTCCGCCGTCGTCGGCGCTTTTCCGATCGGAGTCGACTTCGGTGCCGAAAACCACCGCCAACGGCGGAGCAACTGCAGAAAGTGAATTAGCTCTAGAGCTGACCCTGGGAATTGAGCCGGTGTCGCGTGCCCAGCACGTGATTCCAATGAAGAAGCGGAAGATAGAGGCCGACGGTGGGTTCAGGCCCAGTAACGACGCGTGCAATACGGTTTTGGGCCTGGATTTTGCAGCCTAA 1041 55.81 FPLSPLKYPLVLSFSNPENSFSPNFSLSLWFFFGFYASILPLLLLKMRMSCNGCRVLRKGCSENCSIRPCLHWIKSPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASNDGGVHRRVKTRCRFKRSVVKPKASKGLASVVESTRGLCSTELNRSSSGESSLSHQSDSPHLENESKETESMISVETISPPPPSSALFRSESTSVPKTTANGGATAESELALELTLGIEPVSRAQHVIPMKKRKIEADGGFRPSNDACNTVLGLDFAA 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9423086 9424545 - MC08g1125 Mch8g1294 694915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1294 346 PIRSF AS2 47 337 IPR017414 -
Mch8g1294 346 Pfam Lateral organ boundaries (LOB) domain 50 148 IPR004883 -
Mch8g1294 346 MobiDBLite consensus disorder prediction 259 292 - -
Mch8g1294 346 MobiDBLite consensus disorder prediction 230 292 - -
Mch8g1294 346 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 47 307 - GO:0010468(PANTHER)
Mch8g1294 346 ProSiteProfiles LOB domain profile. 49 155 IPR004883 -
Mch8g1294 346 MobiDBLite consensus disorder prediction 230 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1294 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0355 Mch-Chr11:2185633 Mch8g1294 Mch-Chr8:9423086 7.30E-51 dispersed
Mch1g1274 Mch-Chr1:14957182 Mch8g1294 Mch-Chr8:9423086 1.03E-50 dispersed
Mch8g1294 Mch-Chr8:9423086 Mch9g1958 Mch-Chr9:20983539 6.64E-64 dispersed
Mch8g1294 Mch-Chr8:9423086 Mch6g0374 Mch-Chr6:2484246 5.25E-88 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2579 . 1 218 AS2 family AT1G65620 66.1 8.7e-71 263.5
Mch2g1427 . 1 108 AS2 family AT1G65620 81.5 3.0e-47 185.3
Mch6g0126 . 3 180 AS2 family AT1G65620 53.1 2.8e-45 178.7
Mch8g1482 . 1 175 AS2 family AT1G65620 52.2 3.1e-44 175.3
Mch4g2198 . 2 114 AS2 family AT1G65620 65.5 3.2e-41 165.2
Mch3g1425 . 13 119 AS2 family AT1G65620 73.8 6.1e-40 161.0
Mch4g2472 . 28 156 AS2 family AT1G65620 58.9 1.7e-37 152.9
Mch2g1427 . 1 135 AS2 family AT5G66870 83.0 5.9e-58 221.5
Mch8g2579 . 4 112 AS2 family AT5G66870 77.1 8.3e-44 174.5
Mch6g0126 . 1 113 AS2 family AT5G66870 68.1 1.6e-39 160.2
Mch8g1482 . 7 113 AS2 family AT5G66870 68.2 4.7e-39 158.7
Mch4g2198 . 6 112 AS2 family AT5G66870 64.5 4.0e-38 155.6
Mch4g2495 . 9 117 AS2 family AT5G66870 63.3 1.3e-36 150.6
Mch2g1427 . 2 167 AS2 family AT2G23660 55.4 2.8e-44 176.0
Mch8g2579 . 6 112 AS2 family AT2G23660 69.2 7.3e-40 161.4
Mch6g0126 . 8 113 AS2 family AT2G23660 66.0 2.8e-39 159.5
Mch4g2198 . 6 112 AS2 family AT2G23660 61.7 4.4e-37 152.1
Mch8g1482 . 7 123 AS2 family AT2G23660 58.1 4.4e-37 152.1
Mch4g2198 . 3 113 AS2 family AT3G27650 83.8 5.5e-52 200.7
Mch8g1482 . 4 114 AS2 family AT3G27650 83.8 7.2e-52 200.3
Mch6g0126 . 4 114 AS2 family AT3G27650 80.2 2.8e-48 188.3
Mch8g2579 . 3 112 AS2 family AT3G27650 68.2 6.8e-42 167.2
Mch3g1425 . 13 118 AS2 family AT3G27650 72.6 1.7e-40 162.5
Mch2g1427 . 2 110 AS2 family AT3G27650 67.9 3.7e-40 161.4
Mch6g0126 . 3 135 AS2 family AT5G63090 82.0 3.2e-59 224.9
Mch8g1482 . 1 123 AS2 family AT5G63090 78.2 5.5e-51 197.6
Mch4g2198 . 1 121 AS2 family AT5G63090 77.7 4.6e-50 194.5
Mch3g1425 . 1 126 AS2 family AT5G63090 74.0 5.3e-46 181.0
Mch8g2579 . 3 122 AS2 family AT5G63090 70.8 1.5e-45 179.5
Mch2g1427 . 1 108 AS2 family AT5G63090 71.3 2.0e-40 162.5
Mch3g0858 . 31 142 AS2 family AT5G63090 63.4 1.8e-38 156.0
Mch2g0739 . 13 116 AS2 family AT5G63090 67.3 4.1e-38 154.8
Mch9g1433 . 4 106 AS2 family AT5G63090 69.9 1.5e-37 152.9
Mch9g1433 . 3 114 AS2 family AT2G30130 92.0 3.2e-54 208.4
Mch2g0815 . 1 134 AS2 family AT2G30130 67.4 1.4e-46 183.0
Mch2g0739 . 13 124 AS2 family AT2G30130 74.1 7.9e-45 177.2
Mch3g0858 . 27 146 AS2 family AT2G30130 68.3 1.0e-44 176.8
Mch4g0045 . 17 128 AS2 family AT2G30130 67.0 4.5e-40 161.4
Mch3g0514 . 70 171 AS2 family AT2G30130 67.6 1.2e-37 153.3
Mch6g0126 . 8 111 AS2 family AT2G30130 67.3 2.7e-37 152.1
Mch9g1398 . 47 149 AS2 family AT2G30130 68.9 3.6e-37 151.8
Mch8g2579 . 7 109 AS2 family AT2G30130 67.0 8.0e-37 150.6
Mch3g0858 . 16 181 AS2 family AT1G31320 72.4 4.3e-66 247.7
Mch2g0739 . 1 166 AS2 family AT1G31320 70.1 2.1e-60 228.8
Mch9g1433 . 2 122 AS2 family AT1G31320 68.3 3.5e-44 174.9
Mch4g0045 . 12 125 AS2 family AT1G31320 69.3 3.9e-43 171.4
Mch3g0514 . 70 180 AS2 family AT1G31320 64.9 1.1e-37 153.3
Mch6g0126 . 9 111 AS2 family AT1G31320 68.0 7.1e-37 150.6
Mch3g0514 . 67 235 AS2 family AT2G28500 60.3 8.9e-51 197.2
Mch9g1638 . 47 139 AS2 family AT2G28500 87.1 4.4e-42 168.3
Mch2g0380 . 31 194 AS2 family AT2G28500 53.0 5.8e-42 167.9
Mch9g1433 . 5 113 AS2 family AT2G28500 67.0 2.5e-37 152.5
Mch2g0739 . 12 121 AS2 family AT2G28500 67.3 3.3e-37 152.1
Mch2g0380 . 10 194 AS2 family AT1G07900 65.1 6.4e-47 184.1
Mch9g1638 . 47 202 AS2 family AT1G07900 67.7 6.6e-44 174.1
Mch3g0514 . 62 185 AS2 family AT1G07900 67.7 5.6e-43 171.0
Mch2g0739 . 1 166 AS2 family AT1G16530 58.8 3.9e-48 188.0
Mch3g0858 . 27 181 AS2 family AT1G16530 55.1 4.1e-42 167.9
Mch4g0045 . 17 122 AS2 family AT1G16530 70.1 5.0e-40 161.0
Mch9g1433 . 5 110 AS2 family AT1G16530 68.2 1.8e-37 152.5
Mch9g1398 . 1 161 AS2 family AT2G30340 67.7 1.1e-57 220.3
Mch4g2472 . 17 140 AS2 family AT2G30340 77.4 3.4e-54 208.8
Mch2g0739 . 10 121 AS2 family AT2G30340 60.7 1.4e-36 150.2
Mch9g1398 . 36 181 AS2 family AT2G40470 77.9 5.8e-59 224.2
Mch4g2472 . 17 146 AS2 family AT2G40470 82.1 8.4e-58 220.3
Mch2g0739 . 10 133 AS2 family AT2G40470 59.2 1.2e-40 163.3
Mch3g0858 . 25 142 AS2 family AT2G40470 60.2 2.6e-38 155.6
Mch4g2495 . 1 121 AS2 family AT3G11090 77.7 3.3e-47 184.9
Mch6g2025 . 1 113 AS2 family AT2G42440 80.5 8.8e-49 190.7
Mch9g0985 . 6 126 AS2 family AT2G42440 67.5 2.5e-43 172.6
Mch6g2024 . 17 124 AS2 family AT2G42440 68.5 4.1e-38 155.2
Mch7g0754 . 32 141 AS2 family AT2G42440 66.1 5.3e-38 154.8
Mch6g2025 . 4 113 AS2 family AT3G58190 84.5 6.4e-51 197.6
Mch9g0985 . 1 126 AS2 family AT3G58190 74.2 2.1e-49 192.6
Mch6g2024 . 14 144 AS2 family AT3G58190 62.6 5.4e-42 167.9
Mch7g0754 . 32 130 AS2 family AT3G58190 75.8 1.0e-40 163.7
Mch9g1540 . 7 130 AS2 family AT3G58190 62.9 9.6e-39 157.1
Mch6g2025 . 1 151 AS2 family AT2G31310 54.9 5.2e-41 164.5
Mch6g2024 . 1 209 AS2 family AT2G42430 50.6 4.2e-51 198.4
Mch6g2025 . 3 109 AS2 family AT2G42430 73.8 2.3e-41 166.0
Mch7g0754 . 32 134 AS2 family AT2G42430 74.8 1.2e-40 163.7
Mch9g0985 . 10 113 AS2 family AT2G42430 67.3 4.5e-37 151.8
Mch5g0318 . 6 122 AS2 family AT2G42430 63.2 7.7e-37 151.0
Mch7g0754 . 32 222 AS2 family AT4G00220 63.9 3.5e-60 228.4
Mch5g0318 . 6 182 AS2 family AT4G00220 53.6 2.7e-44 175.6
Mch7g0755 . 9 190 AS2 family AT4G00220 56.5 2.4e-40 162.5
Mch7g0754 . 32 237 AS2 family AT2G45420 71.5 1.4e-73 273.1
Mch5g0318 . 20 175 AS2 family AT2G45420 60.8 1.6e-51 199.9
Mch6g2024 . 18 120 AS2 family AT2G45420 77.7 2.5e-41 166.0
Mch9g0985 . 11 117 AS2 family AT2G45420 69.2 2.7e-40 162.5
Mch6g2025 . 7 109 AS2 family AT2G45420 71.8 1.0e-39 160.6
Mch7g0755 . 9 97 AS2 family AT2G45420 80.9 6.8e-39 157.9
Mch9g1540 . 14 116 AS2 family AT2G45420 65.0 4.8e-37 151.8
Mch7g0754 . 32 133 AS2 family AT3G03760 80.4 2.2e-40 162.9
Mch6g2025 . 2 111 AS2 family AT3G03760 68.2 1.7e-37 153.3
Mch6g2024 . 17 124 AS2 family AT3G03760 70.4 3.9e-37 152.1
Mch7g0754 . 32 142 AS2 family AT4G00210 73.9 2.6e-44 175.6
Mch5g0318 . 11 139 AS2 family AT4G00210 61.2 1.8e-40 162.9
Mch9g0985 . 1 115 AS2 family AT4G00210 61.7 1.3e-38 156.8
Mch6g2025 . 2 107 AS2 family AT4G00210 67.0 3.7e-38 155.2
Mch6g2024 . 18 120 AS2 family AT4G00210 67.0 9.1e-37 150.6
Mch7g0755 . 6 204 AS2 family AT2G45410 52.8 3.4e-48 188.3
Mch7g0754 . 32 224 AS2 family AT2G45410 51.3 3.8e-47 184.9
Mch5g0318 . 8 138 AS2 family AT2G45410 64.1 4.6e-45 177.9
Mch6g2024 . 6 120 AS2 family AT2G45410 63.8 7.1e-38 154.1
Mch6g2025 . 3 102 AS2 family AT2G45410 69.0 1.2e-37 153.3
Mch9g1540 . 8 118 AS2 family AT5G06080 74.8 1.6e-44 176.0
Mch9g0250 . 22 130 AS2 family AT3G13850 75.2 6.0e-43 171.4
Mch2g0516 . 14 158 AS2 family AT1G06280 53.8 1.1e-36 150.2
Mch8g1294 . 47 208 AS2 family AT1G68510 65.3 8.9e-59 223.8
Mch9g1958 . 1 150 AS2 family AT1G68510 58.2 1.3e-46 183.3
Mch1g1274 . 1 104 AS2 family AT1G68510 62.5 7.9e-39 157.5
Mch11g0355 . 1 116 AS2 family AT1G68510 61.0 1.8e-38 156.4
Mch8g1294 . 47 342 AS2 family AT1G67100 52.2 5.4e-72 267.7
Mch6g0374 . 1 134 AS2 family AT1G67100 72.8 5.8e-58 221.1
Mch9g1958 . 1 127 AS2 family AT1G67100 65.9 3.2e-48 188.7
Mch1g1274 . 1 110 AS2 family AT1G67100 66.4 6.2e-44 174.5
Mch11g0355 . 1 110 AS2 family AT1G67100 66.4 1.3e-41 166.8
Mch8g1294 . 47 342 AS2 family AT3G02550 57.0 7.9e-80 293.9
Mch6g0374 . 1 151 AS2 family AT3G02550 71.8 6.7e-63 237.7
Mch9g1958 . 1 135 AS2 family AT3G02550 62.6 1.3e-45 180.3
Mch1g1274 . 1 135 AS2 family AT3G02550 54.4 3.6e-40 162.2
Mch11g0355 . 1 110 AS2 family AT3G02550 63.6 1.7e-37 153.3
Mch1g1274 . 1 234 AS2 family AT5G67420 61.4 5.8e-72 267.7
Mch11g0355 . 1 141 AS2 family AT5G67420 62.0 1.5e-48 189.9
Mch8g1294 . 49 158 AS2 family AT5G67420 66.4 1.1e-43 173.7
Mch6g0374 . 3 112 AS2 family AT5G67420 60.9 5.8e-40 161.4
Mch9g1958 . 1 104 AS2 family AT5G67420 61.5 5.5e-38 154.8
Mch1g1274 . 1 234 AS2 family AT3G49940 61.4 3.0e-73 271.9
Mch11g0355 . 1 141 AS2 family AT3G49940 65.2 6.8e-49 191.0
Mch8g1294 . 49 203 AS2 family AT3G49940 52.9 5.0e-44 174.9
Mch6g0374 . 3 112 AS2 family AT3G49940 60.0 2.9e-39 159.1
Mch9g1958 . 1 104 AS2 family AT3G49940 63.5 4.1e-38 155.2
Mch1g1274 . 1 234 AS2 family AT4G37540 57.8 4.6e-66 248.1
Mch11g0355 . 1 204 AS2 family AT4G37540 50.2 2.1e-50 196.1
Mch8g1294 . 49 206 AS2 family AT4G37540 53.8 7.8e-42 167.5
Mch6g0374 . 3 113 AS2 family AT4G37540 60.4 8.1e-39 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007819 2 1 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43861 PF03195 LOB 2.40E-24 No_clan Mch TF