Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1347 ATGTCCATCCTGCCTTCACAAATCCAGGGTTCCACTTCAGCGTCTTCTTCTTCAGCATCCTCTCTAAACCCTAATTCCCACCATGGATATGGACCCGACCCCCTTCTCTCTCTTTCCCCCCCGACGCATTCCTTTGGATCCCTGCGGATCTCCGATCCCGAGTCTCATCTCCGTGAACCCTGCAATGTTTCAGGTCCATCGACTCAACCTGCAAATGATGCTCAATCTTCCAAGAAGGTAAGTGAATCAGAGACTCGGAATGATTTGAAGATGTTATCTCGTCCAAACACTGAAACCCATTTGCGGTGTCACTCTGGTGATGGTGGACAAGAGGGTGGATCAATCCTGCCTGGGAGTAAGATGTCATCTACTCTCATTTCTTCTCCCGACCAGCAAAGTGCTAGACCTCTGATCTCTCATGGCAGCAATAAACGCTCAGCTGGAAGAAAATCCCAAATCACAAATGGCAACCACTTGCTTAATTTTCAATATGATCCCATTTCTCGTCCTCGTCCTCGACCTAGAGCTCCTCCTCCAAGAAGGCCACATAAGATAAAGCCATACAATAAGGATCTCTTTCTCCATGCTAATTACAAATTTGTGGTATTAGATTCAGGTTATCATACAGCTGAATATTTGGATCCTGATAAAATGCTGCATTGGGAGGATATTATATGTGTGAGGTATTCTACACCATCGACGGTCCAGTGTCCTATTTGTCTAGAACATCCGCTGTGTCCTCAAATTACCTCATGTGGGCATATTTATTGTTTTCCGTGCATTTTGAGGTACCTGTTAATGGGCAAGGAGGATCATAAAGGTGATTGCTGGAAAAAGTGCCCTTTGTGTTTTGTGATGTTGTCGCTGAAGGATTTATACACCGTCCACATTGAGCTGTTGAAGCAATATTCTGTTGGTGATACTATAGATTTTATGCGTTTAACTCGGCAAAAAAATTCATTTACCATATCATTTAAAGATAAACAAGAGGATGATGCCAGGTCAAGTGACGGTGATGAAATCTATGATTCTTTTTCAAAGTTTATATTTACATCTGATGTGGATCTCTCTGTGCGGAAAGCAATATCTGATCTAGATGGGTGGTTAGCAAAAGCTGATGCAGGGGAAGTAGATGACCTGGAAAAGCTTCCATATGTTTGTGCTGCATTAGAACAATTGGAGCAGCGAAAGAAGTATTGGAATGATCATCAGGCTTGTTTTAAGCACGATGACTGTCAGATAGGATCTCATGTGCTCCCGTCAACTGATAATATTGACAATCATGGTCCTGGAGCATGCAGTTCTAGACGTGAGGCTTCTTCCATAATTAGTGATGGAAGCAAGTTTCATGGAAATGTAGTGCAAAATAAGTTGGATTATTCTACTCCTGTGGGTCAGACTGGGGCTGCTGGTGAATCTTTAGAACTCCAACAAAACTCAAATGAAATTAGTAGAGATGTGAAGGATAAGGACTCATACAACTTTTACCAGGCTACCGATGGCCAGCATATCATTCTCCATCCATTAAACATAAAGTGTCTTTTACAACATTATGGGAGTTACGATAGGATGCCACTCAGAATAAGTGGAAAGATTTTAGAATTTGAAACAGTGACCCAGACTGAGGCCACAAGGAGGCGTTATCGTTATTTAAGTCATTTTTCTTTAACAACGTCATTTCAGCTCTGTGAAATTGATTTGACCAACCTGTTACCTTTGTCCTCGTTGAATCCATTCATGGATGAGATAAAGAAGCGTGAGAAGCAGAGGAAACAACTTGCAAAAAAGATGGAAAGGGAGAAGATCAAAGCAGAAGCTGCTTCAACGTCTTCTTTGCCAATGATGGCTAGTTCTGGACATTTCTATCATCACGATACTCCAGAGCTTTCCCTGGATGATTTTGAAGCTTTAGGAAATTCTCCTGGGACATCATCGAGCTCTCCTGTTGGGGGGCGGCTACTGTTCTCAAGCGTTACAAGACTTGGTTTTGCAGCGGCGCATGATTCTCCATCCTTGAGAATTGAGGAAACCGGTTCTGTGCACTCTAATGAAGTGAAAAGTGATCTCTCTGGTGTCAATGACATACAGAGTGCAACCACATCGTTTGCGAACGTAATATCGAGAGCAAAATCTGGAGGAAATATAGAATCTCCAAAGGCGAATGAGGTCGGAAAGAAGGGGAAGAAACCAAGTCGAGTTCTGTTGTCCACGGCAGGTGGTCGGCGCTATTGA 2232 42.97 MSILPSQIQGSTSASSSSASSLNPNSHHGYGPDPLLSLSPPTHSFGSLRISDPESHLREPCNVSGPSTQPANDAQSSKKVSESETRNDLKMLSRPNTETHLRCHSGDGGQEGGSILPGSKMSSTLISSPDQQSARPLISHGSNKRSAGRKSQITNGNHLLNFQYDPISRPRPRPRAPPPRRPHKIKPYNKDLFLHANYKFVVLDSGYHTAEYLDPDKMLHWEDIICVRYSTPSTVQCPICLEHPLCPQITSCGHIYCFPCILRYLLMGKEDHKGDCWKKCPLCFVMLSLKDLYTVHIELLKQYSVGDTIDFMRLTRQKNSFTISFKDKQEDDARSSDGDEIYDSFSKFIFTSDVDLSVRKAISDLDGWLAKADAGEVDDLEKLPYVCAALEQLEQRKKYWNDHQACFKHDDCQIGSHVLPSTDNIDNHGPGACSSRREASSIISDGSKFHGNVVQNKLDYSTPVGQTGAAGESLELQQNSNEISRDVKDKDSYNFYQATDGQHIILHPLNIKCLLQHYGSYDRMPLRISGKILEFETVTQTEATRRRYRYLSHFSLTTSFQLCEIDLTNLLPLSSLNPFMDEIKKREKQRKQLAKKMEREKIKAEAASTSSLPMMASSGHFYHHDTPELSLDDFEALGNSPGTSSSSPVGGRLLFSSVTRLGFAAAHDSPSLRIEETGSVHSNEVKSDLSGVNDIQSATTSFANVISRAKSGGNIESPKANEVGKKGKKPSRVLLSTAGGRRY 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9966739 9973639 + MC08g1171 Mch8g1347 694968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1347 743 SMART ring_2 237 283 IPR001841 -
Mch8g1347 743 MobiDBLite consensus disorder prediction 710 743 - -
Mch8g1347 743 ProSitePatterns Zinc finger RING-type signature. 252 261 IPR017907 -
Mch8g1347 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 331 IPR013083 -
Mch8g1347 743 MobiDBLite consensus disorder prediction 116 162 - -
Mch8g1347 743 MobiDBLite consensus disorder prediction 79 105 - -
Mch8g1347 743 PANTHER RING FINGER 10 FAMILY MEMBER 68 743 IPR039739 GO:0000976(PANTHER)|GO:0045944(PANTHER)
Mch8g1347 743 FunFam RING finger protein 10 230 298 - -
Mch8g1347 743 MobiDBLite consensus disorder prediction 1 184 - -
Mch8g1347 743 Coils Coil 580 603 - -
Mch8g1347 743 MobiDBLite consensus disorder prediction 1 27 - -
Mch8g1347 743 SUPERFAMILY RING/U-box 232 296 - -
Mch8g1347 743 MobiDBLite consensus disorder prediction 61 78 - -
Mch8g1347 743 Pfam Zinc finger, C3HC4 type (RING finger) 237 283 IPR018957 GO:0046872(InterPro)
Mch8g1347 743 CDD RING-HC_RNF10 235 292 - -
Mch8g1347 743 ProSiteProfiles Zinc finger RING-type profile. 237 283 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1347 Mch-Chr8:9966739 Mch11g1077 Mch-Chr11:7502908 1.20E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1347 K26979 - csv:101203987 1144.8