Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g1350 | ATGCTTCCCAAGCCCACCGGAATCCTCTGGATCGACGGCGACCACGACGACGCCGCCTCTTGGACCAGAAACAACAACGACAACGACGACGACATCGCCATTGCCGGCTCCATTTCTTCCTTCAAATCCATGCTCGAACCCGACTGGTACATCAACTCCTCTACTCCTCTCAATCCCTCCTCTCTCCAAGATTTCCATTCCCTCTCTTCTGCTTCTCACCACCACATTCCGGACCTTGCTTTCTCCTCCAATCCTTCTGATAACTTGCTCTTGAACCCCATAGATTCCTCCTCTTCCTGCTCTCCCTCCCAGGCTTTTGCTCTCGATCCTTCGCATTCCCAATCCCAATCCATGTTGCCTCCTCATAAATCGTGTTTCTCTTCTCTTCTTAATGTCGTTTCCGCCAGCAATTTTGATAATGGCTTCGATTTGGGCGGCGACACTGGCCTGCTTGGATCTTACCAGGGGAATCCAGCTTCCAATTCCCCCGTTTTGATGGGCTTCACCGGCATTTCGTCTCTACCTCAAATCGGTAATCAGGAAATGAGCTTAAACAACTCCGATTTTCCGCCGGGCCGGTTGCTTCCGGTCGTTGATAACCCTCCCGCGTTCGGAGCTGGCTTTAATCCGGCGGCTGTCTTTGAGAGTTTCGATGGCTGTGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAAGTGTTTCCCCAGGTCGGCACACAGCCGACGCTGTTCCAGAAGCGAGCGGCGCACCGCGTTGGCTCCGCCGGTGCTGATAAACTGGAGAATTTGGAGGTTTCGGATATGAAATTAGGAGAAGGCTCAATGTGGACGGCAAATTTGGAGAAGCTGAGGAATAAGAACGGCGAAGAGGATATTGAGGACGGCAGCGTGGACGTTTCTCGCTTCAATTATGATTCCGACGAACCCAATGAGTACAATAAGCAAGAGGACAACATTAACGCAAAAAACTGCGGAAGCAATTCCAATGCCAATAGTACTGTAACTGGCGGAGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCAAAAAATCTCATGGCGGAGCGGCGGCGCAGGAAGAAGCTCAACGATAGGCTTTACATGCTTAGGTCCGTCGTACCCAAAATAAGCAAGATGGATAGAGCTTCAATACTTGGAGATGCCATTGATTACTTGAAGGAGCTTCTCCAAAGGATAAATGATCTTCACAATGAACTTGAGTCAACTCCTGGTTCTCTGTTGCAGCCTTCTGCGAGCTTTCACCCGTTGACGCCGACGCCGCCGACTCTTCCCTGTCGGGTCAAAGAAGAGCTGTGTCCAAGCTCCTTGTCCAGCCCTAAAACCCAGCCTGCCAGGGTTGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAACATTCACATGTTTTGTTCTCGCAAGCCGGGTCTCTTGCTATCCACCATGAGAGCTCTCGATAACCTCGGGCTGGACGTCCAACAAGCAGTGATCAGCTGTTTCAATGGATTTGCTTTGGATGTGTTTCGAGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTACCTGAGCAAATTAAAGCAGTGCTATTGGATTCAGCTGGTTTACATGGTGTGATTTAG | 1620 | 50.8 | MLPKPTGILWIDGDHDDAASWTRNNNDNDDDIAIAGSISSFKSMLEPDWYINSSTPLNPSSLQDFHSLSSASHHHIPDLAFSSNPSDNLLLNPIDSSSSCSPSQAFALDPSHSQSQSMLPPHKSCFSSLLNVVSASNFDNGFDLGGDTGLLGSYQGNPASNSPVLMGFTGISSLPQIGNQEMSLNNSDFPPGRLLPVVDNPPAFGAGFNPAAVFESFDGCGNALFQNRSKVLRPLEVFPQVGTQPTLFQKRAAHRVGSAGADKLENLEVSDMKLGEGSMWTANLEKLRNKNGEEDIEDGSVDVSRFNYDSDEPNEYNKQEDNINAKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPGSLLQPSASFHPLTPTPPTLPCRVKEELCPSSLSSPKTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLDSAGLHGVI | 539 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 9987288 | 9991286 | - | MC08g1174 | Mch8g1350 | 694971 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g1350 | 539 | Coils | Coil | 392 | 412 | - | - | |
Mch8g1350 | 539 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 307 | 534 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Mch8g1350 | 539 | CDD | bHLH_AtAMS_like | 352 | 415 | - | - | |
Mch8g1350 | 539 | MobiDBLite | consensus disorder prediction | 320 | 342 | - | - | |
Mch8g1350 | 539 | Pfam | Helix-loop-helix DNA-binding domain | 356 | 398 | IPR011598 | GO:0046983(InterPro) | |
Mch8g1350 | 539 | SMART | finulus | 355 | 404 | IPR011598 | GO:0046983(InterPro) | |
Mch8g1350 | 539 | Pfam | Plant bHLH transcription factor, ACT-like domain | 456 | 529 | IPR054502 | - | |
Mch8g1350 | 539 | FunFam | BHLH transcription factor | 345 | 413 | - | - | |
Mch8g1350 | 539 | ProSiteProfiles | ACT domain profile. | 467 | 539 | IPR002912 | - | |
Mch8g1350 | 539 | Gene3D | - | 343 | 413 | IPR036638 | GO:0046983(InterPro) | |
Mch8g1350 | 539 | CDD | ACT_UUR-ACR-like | 468 | 528 | - | - | |
Mch8g1350 | 539 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 352 | 423 | IPR036638 | GO:0046983(InterPro) | |
Mch8g1350 | 539 | MobiDBLite | consensus disorder prediction | 315 | 349 | - | - | |
Mch8g1350 | 539 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 349 | 398 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0736 | Mch-Chr11:4943886 | Mch8g1350 | Mch-Chr8:9987288 | 1.51E-37 | dispersed | |
Mch3g1317 | Mch-Chr3:15969686 | Mch8g1350 | Mch-Chr8:9987288 | 1.38E-163 | dispersed | |
Mch6g0493 | Mch-Chr6:3265113 | Mch8g1350 | Mch-Chr8:9987288 | 7.39E-14 | dispersed | |
Mch7g0827 | Mch-Chr7:12860085 | Mch8g1350 | Mch-Chr8:9987288 | 1.97E-09 | dispersed | |
Mch8g1350 | Mch-Chr8:9987288 | Mch9g2245 | Mch-Chr9:22852426 | 3.00E-22 | dispersed | |
Mch8g1350 | Mch-Chr8:9987288 | Mch8g0296 | Mch-Chr8:2051861 | 9.09E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43864 | PF00010 | HLH | 2.20E-09 | No_clan | Mch | TF |
Pathway information
