Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1350 ATGCTTCCCAAGCCCACCGGAATCCTCTGGATCGACGGCGACCACGACGACGCCGCCTCTTGGACCAGAAACAACAACGACAACGACGACGACATCGCCATTGCCGGCTCCATTTCTTCCTTCAAATCCATGCTCGAACCCGACTGGTACATCAACTCCTCTACTCCTCTCAATCCCTCCTCTCTCCAAGATTTCCATTCCCTCTCTTCTGCTTCTCACCACCACATTCCGGACCTTGCTTTCTCCTCCAATCCTTCTGATAACTTGCTCTTGAACCCCATAGATTCCTCCTCTTCCTGCTCTCCCTCCCAGGCTTTTGCTCTCGATCCTTCGCATTCCCAATCCCAATCCATGTTGCCTCCTCATAAATCGTGTTTCTCTTCTCTTCTTAATGTCGTTTCCGCCAGCAATTTTGATAATGGCTTCGATTTGGGCGGCGACACTGGCCTGCTTGGATCTTACCAGGGGAATCCAGCTTCCAATTCCCCCGTTTTGATGGGCTTCACCGGCATTTCGTCTCTACCTCAAATCGGTAATCAGGAAATGAGCTTAAACAACTCCGATTTTCCGCCGGGCCGGTTGCTTCCGGTCGTTGATAACCCTCCCGCGTTCGGAGCTGGCTTTAATCCGGCGGCTGTCTTTGAGAGTTTCGATGGCTGTGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAAGTGTTTCCCCAGGTCGGCACACAGCCGACGCTGTTCCAGAAGCGAGCGGCGCACCGCGTTGGCTCCGCCGGTGCTGATAAACTGGAGAATTTGGAGGTTTCGGATATGAAATTAGGAGAAGGCTCAATGTGGACGGCAAATTTGGAGAAGCTGAGGAATAAGAACGGCGAAGAGGATATTGAGGACGGCAGCGTGGACGTTTCTCGCTTCAATTATGATTCCGACGAACCCAATGAGTACAATAAGCAAGAGGACAACATTAACGCAAAAAACTGCGGAAGCAATTCCAATGCCAATAGTACTGTAACTGGCGGAGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCAAAAAATCTCATGGCGGAGCGGCGGCGCAGGAAGAAGCTCAACGATAGGCTTTACATGCTTAGGTCCGTCGTACCCAAAATAAGCAAGATGGATAGAGCTTCAATACTTGGAGATGCCATTGATTACTTGAAGGAGCTTCTCCAAAGGATAAATGATCTTCACAATGAACTTGAGTCAACTCCTGGTTCTCTGTTGCAGCCTTCTGCGAGCTTTCACCCGTTGACGCCGACGCCGCCGACTCTTCCCTGTCGGGTCAAAGAAGAGCTGTGTCCAAGCTCCTTGTCCAGCCCTAAAACCCAGCCTGCCAGGGTTGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAACATTCACATGTTTTGTTCTCGCAAGCCGGGTCTCTTGCTATCCACCATGAGAGCTCTCGATAACCTCGGGCTGGACGTCCAACAAGCAGTGATCAGCTGTTTCAATGGATTTGCTTTGGATGTGTTTCGAGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTACCTGAGCAAATTAAAGCAGTGCTATTGGATTCAGCTGGTTTACATGGTGTGATTTAG 1620 50.8 MLPKPTGILWIDGDHDDAASWTRNNNDNDDDIAIAGSISSFKSMLEPDWYINSSTPLNPSSLQDFHSLSSASHHHIPDLAFSSNPSDNLLLNPIDSSSSCSPSQAFALDPSHSQSQSMLPPHKSCFSSLLNVVSASNFDNGFDLGGDTGLLGSYQGNPASNSPVLMGFTGISSLPQIGNQEMSLNNSDFPPGRLLPVVDNPPAFGAGFNPAAVFESFDGCGNALFQNRSKVLRPLEVFPQVGTQPTLFQKRAAHRVGSAGADKLENLEVSDMKLGEGSMWTANLEKLRNKNGEEDIEDGSVDVSRFNYDSDEPNEYNKQEDNINAKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPGSLLQPSASFHPLTPTPPTLPCRVKEELCPSSLSSPKTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLDSAGLHGVI 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9987288 9991286 - MC08g1174 Mch8g1350 694971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1350 539 Coils Coil 392 412 - -
Mch8g1350 539 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 307 534 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Mch8g1350 539 CDD bHLH_AtAMS_like 352 415 - -
Mch8g1350 539 MobiDBLite consensus disorder prediction 320 342 - -
Mch8g1350 539 Pfam Helix-loop-helix DNA-binding domain 356 398 IPR011598 GO:0046983(InterPro)
Mch8g1350 539 SMART finulus 355 404 IPR011598 GO:0046983(InterPro)
Mch8g1350 539 Pfam Plant bHLH transcription factor, ACT-like domain 456 529 IPR054502 -
Mch8g1350 539 FunFam BHLH transcription factor 345 413 - -
Mch8g1350 539 ProSiteProfiles ACT domain profile. 467 539 IPR002912 -
Mch8g1350 539 Gene3D - 343 413 IPR036638 GO:0046983(InterPro)
Mch8g1350 539 CDD ACT_UUR-ACR-like 468 528 - -
Mch8g1350 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 423 IPR036638 GO:0046983(InterPro)
Mch8g1350 539 MobiDBLite consensus disorder prediction 315 349 - -
Mch8g1350 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0736 Mch-Chr11:4943886 Mch8g1350 Mch-Chr8:9987288 1.51E-37 dispersed
Mch3g1317 Mch-Chr3:15969686 Mch8g1350 Mch-Chr8:9987288 1.38E-163 dispersed
Mch6g0493 Mch-Chr6:3265113 Mch8g1350 Mch-Chr8:9987288 7.39E-14 dispersed
Mch7g0827 Mch-Chr7:12860085 Mch8g1350 Mch-Chr8:9987288 1.97E-09 dispersed
Mch8g1350 Mch-Chr8:9987288 Mch9g2245 Mch-Chr9:22852426 3.00E-22 dispersed
Mch8g1350 Mch-Chr8:9987288 Mch8g0296 Mch-Chr8:2051861 9.09E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43864 PF00010 HLH 2.20E-09 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1350 - - - 0.0