Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1386 GAAGAAGTATCAATCGATAATCCGATCATGGGGGAGAACAAACCGGCGGAAATCAAAGATTTCCAAATAGCGATTGCGGAGAAAGAAGAGGGCAAAAAGCAGTTGCCCCCAAAGCGAAGCTCCAACAAGGACCGCCACACCAAAGTGGAGGGCCGCGGCCGGAGAATTCGGATGCCGGCTCTGTGCGCCGCCAGAATCTTCCAATTGACCAGAGAATTGGGTCATAAATCCGACGGAGAAACCATCCAGTGGCTGCTGCAGCAGGCGGAGCCCTCGATCATCGCCGCCACTGGCACCGGCACGATTCCTGCCTCTGCCCTCGCCGCCGCCGCCGCCGGGGTGTCCGTTTCCCAGCAGGCGGCGTCTCTCTCCGCCGGATTGCATCAGAAATTGGAGGAATTAGGAGGGGGCGGGTCCAGTAGGGCCAATTGGGGGAATTTTGGGAGACCCCATTTGGCGACCACTCCCCCAGGGGTTTGGCCCTCCTCTGTTTCTGCCGCCTTTGGCTTTCACTCATCATCAACATCATCCTCTTCTTCCCCTCCATCAACCACAAATTTAGCCACTGAAACTTCTAATTACTTTCACAAACTTGGGTTCCCCCCCTTTGACTTGCCCCCCACCAATATGGGTCCTATGAGTTTCACCTCCATTTTAGGAGCCAACACCCACCAACAGCTCCCTGGTTTGGAGCTGGGTTTGTCCCAAGATGGCCATATTGGGGTCCTAAATCCTCAGATATTGAACCAAGTTTACCACCAAATGGGTCAGCCCAGAGTTCCTCACCATCACCATCACCAACAACAACCTTCTGCTAAGGATGATTCTCAGGACTCAGGG 840 54.52 EEVSIDNPIMGENKPAEIKDFQIAIAEKEEGKKQLPPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAAGVSVSQQAASLSAGLHQKLEELGGGGSSRANWGNFGRPHLATTPPGVWPSSVSAAFGFHSSSTSSSSSPPSTTNLATETSNYFHKLGFPPFDLPPTNMGPMSFTSILGANTHQQLPGLELGLSQDGHIGVLNPQILNQVYHQMGQPRVPHHHHHQQQPSAKDDSQDSG 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10294117 10294956 - MC08g1198 Mch8g1386 695007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1386 280 MobiDBLite consensus disorder prediction 257 280 - -
Mch8g1386 280 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 35 271 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Mch8g1386 280 Pfam TCP family transcription factor 41 120 IPR017887 -
Mch8g1386 280 ProSiteProfiles TCP domain profile. 42 96 IPR017887 -
Mch8g1386 280 MobiDBLite consensus disorder prediction 28 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1386 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0831 Mch-Chr1:11806107 Mch8g1386 Mch-Chr8:10294117 1.75E-32 dispersed
Mch7g0736 Mch-Chr7:11961125 Mch8g1386 Mch-Chr8:10294117 4.30E-35 dispersed
Mch8g1386 Mch-Chr8:10294117 Mch9g2143 Mch-Chr9:22181244 1.44E-36 dispersed
Mch10g1328 Mch-Chr10:11505887 Mch8g1386 Mch-Chr8:10294117 2.02E-11 transposed
Mch7g0051 Mch-Chr7:506676 Mch8g1386 Mch-Chr8:10294117 1.20E-54 wgd
Mch8g1386 Mch-Chr8:10294117 Mch9g2397 Mch-Chr9:23740892 9.86E-32 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1660 . 29 256 TCP Transcription Factor Family AT5G23280 60.7 2.2e-63 239.2
Mch4g1635 . 31 251 TCP Transcription Factor Family AT5G23280 61.5 4.2e-62 235.0
Mch9g2143 . 48 152 TCP Transcription Factor Family AT3G47620 86.0 4.9e-43 172.6
Mch3g1754 . 27 135 TCP Transcription Factor Family AT3G47620 77.1 3.3e-39 159.8
Mch9g2397 . 144 226 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Mch9g2397 . 144 236 TCP Transcription Factor Family AT1G69690 82.8 1.3e-36 150.6
Mch8g1386 . 17 280 TCP Transcription Factor Family AT3G27010 54.9 2.3e-54 209.5
Mch9g1660 . 25 253 TCP Transcription Factor Family AT5G08330 57.3 4.1e-59 224.9
Mch4g1635 . 27 251 TCP Transcription Factor Family AT5G08330 62.9 1.6e-58 223.0
Mch8g2352 . 35 148 TCP Transcription Factor Family AT3G02150 70.0 7.7e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43867 PF03634 TCP 1.20E-30 No_clan Mch TF