Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1391 ATGGAGAATTACCAGATGTTCTTCCCTTGCCCCGGCGGCGCTCTGCCGCCTTATCATCCCGATCTGCCGTCCGCCATGGACGCCGCGGCTGCTGCGTCTCCCGTTTTTGCCGGTTTTCACGGCGGCGATCTCCGTTCAGGTGGGTTTTTGGGGCTGAAGACAGAGGTCGATGCGGCAGCGGCGGCGATGGCCGTGGTCGACGCCGACGAAGGAGAAGTGAAATTGAGCAAAAAGAAAGGGGAGAAGAAGGTGAGGAAACCAAGATATGCATTTCAGACAAGGAGCCAAGTTGACATTCTTGACGATGGCTATCGTTGGAGAAAATATGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCCAGGAGCTATTATAGGTGCACACACCAAGGGTGCAATGTGAAGAAGCAAGTGCAAAGGCTAACAAGAGATGAAGGAGTGGTGGTGACAACTTATGAAGGCATGCACACCCACCCCATTGACAAGCCCTCAGACAACTTTGAACAAATCTTGAGTAGAATGCAAATTTACAGCACTCCTTTCTGA 543 51.01 MENYQMFFPCPGGALPPYHPDLPSAMDAAAAASPVFAGFHGGDLRSGGFLGLKTEVDAAAAAMAVVDADEGEVKLSKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHPIDKPSDNFEQILSRMQIYSTPF 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10352924 10355362 + MC08g1202 Mch8g1391 695012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1391 180 SMART WRKY_cls 100 159 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1391 180 FunFam WRKY transcription factor 57 86 160 - -
Mch8g1391 180 SUPERFAMILY WRKY DNA-binding domain 92 159 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1391 180 Gene3D WRKY domain 85 160 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1391 180 ProSiteProfiles WRKY domain profile. 95 160 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1391 180 Pfam WRKY DNA -binding domain 101 158 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1391 180 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 73 160 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0840 Mch-Chr10:5868810 Mch8g1391 Mch-Chr8:10352924 5.32E-38 dispersed
Mch5g0008 Mch-Chr5:68392 Mch8g1391 Mch-Chr8:10352924 2.40E-35 dispersed
Mch5g0954 Mch-Chr5:7126538 Mch8g1391 Mch-Chr8:10352924 1.06E-58 dispersed
Mch7g1247 Mch-Chr7:15992564 Mch8g1391 Mch-Chr8:10352924 6.73E-35 dispersed
Mch8g1391 Mch-Chr8:10352924 Mch9g0642 Mch-Chr9:4818780 2.09E-34 dispersed
Mch8g1391 Mch-Chr8:10352924 Mch1g1999 Mch-Chr1:19577315 3.08E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43868 PF03106 WRKY 1.80E-26 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1391 - - - 0.0