Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1392 ATGGATTGGGGTTTGGGAAAATTTTCTGGGGAAAAATCCGCTTTCCGGGAATCCAAACAGACCCCTCCTCCCCCTCCAAGTTTCTCCGATTCCATAGGTTCCAACAACGAAGAATCGAGCTCCTCCTCCCATGGATCCTCCAAAAGGACTCGTGTCCTCCATGGCACCCAGAATCAGACATGTTTGGTCGACGGCTGCGATTCGGACCTCAAAAATTGCAAGGATTACCACCGCCGCCATAGGGTCTGCGATTCCCACTCCAAAACCCCTGTTGTGATGGTCAGGGGAGAGGAGAAGCGATTCTGCCAACAGTGCAGCAGATTCCACTCGCTGGGTGAGTTCGATGAGGTGAAGAGAAGCTGCAGGAAACGGCTGGATGGCCACAATCGGCGCCGGAGAAAGCCTCAGCCGGAGTCCTTGATCTTCAGTTCCAGAGATTTCCTGTCCAATTGCAAAGGTCCAGTTTTGCTGCACTTCAGTGATCCAGCGGTTTATGGACCTGATATTGGTAAGACTCTGTGGCCTGTAAGAAGTGAGGAGAAAATGAAATCTATGGTTCCATCAAACTCCTTCAACTATGGAGGAGAGAACAAACAGTTGCCATTTTTCCTGCAGAGAAATGGCACAAAGCAAGGCAAGCAAATGGGTTCTTCTCAGTTGTTTTTCAATCAGCAACTTCCTGATACAATCTCTCTGGGAAGTGAAGTGGGCAGCCAGAAAATTCTGCCCACCAATCTCTCGCCCGAGGATTCAGGTTGTGCTCTCTATCTTCTGTCATCGCACCCGGTGCAAGCTCTCCCAGATTCTGGCCTGAGCTCTCTGGTTCAGTCCCATCTGGGTATTCCAGTCCAAACTCAAGACACTGAGCTGCTGCATTTCAGTAGCCTAAGTGACTTCTCTGGCTCCTTTGGCTCCAAAGACAAGCCTGTTTGTAAAACCAGCCTTCATGGTGAGTTGGTTCTTGAAATGGAGGAATCTGATGGCTTGTTCCACAGTGAGGCTCCACACAAGTTTCCCATTTCTTGGGAGTAG 1032 49.9 MDWGLGKFSGEKSAFRESKQTPPPPPSFSDSIGSNNEESSSSSHGSSKRTRVLHGTQNQTCLVDGCDSDLKNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLIFSSRDFLSNCKGPVLLHFSDPAVYGPDIGKTLWPVRSEEKMKSMVPSNSFNYGGENKQLPFFLQRNGTKQGKQMGSSQLFFNQQLPDTISLGSEVGSQKILPTNLSPEDSGCALYLLSSHPVQALPDSGLSSLVQSHLGIPVQTQDTELLHFSSLSDFSGSFGSKDKPVCKTSLHGELVLEMEESDGLFHSEAPHKFPISWE 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10364197 10366421 + MC08g1203 Mch8g1392 695013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1392 343 MobiDBLite consensus disorder prediction 30 53 - -
Mch8g1392 343 MobiDBLite consensus disorder prediction 1 53 - -
Mch8g1392 343 Gene3D - 52 122 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch8g1392 343 ProSiteProfiles Zinc finger SBP-type profile. 58 135 IPR004333 GO:0003677(InterPro)
Mch8g1392 343 SUPERFAMILY SBT domain 60 140 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch8g1392 343 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 221 IPR044817 GO:0003677(InterPro)
Mch8g1392 343 FunFam Squamosa promoter-binding-like protein 14 52 122 - -
Mch8g1392 343 Pfam SBP domain 61 134 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1392 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1334 Mch-Chr3:16093399 Mch8g1392 Mch-Chr8:10364197 4.39E-42 dispersed
Mch8g1392 Mch-Chr8:10364197 Mch8g2099 Mch-Chr8:24026372 2.13E-29 dispersed
Mch6g0049 Mch-Chr6:291451 Mch8g1392 Mch-Chr8:10364197 5.83E-47 wgd
Mch7g0067 Mch-Chr7:649973 Mch8g1392 Mch-Chr8:10364197 8.43E-51 wgd
Mch8g1392 Mch-Chr8:10364197 Mch9g2377 Mch-Chr9:23647717 2.41E-31 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2099 . 179 1015 SBP-box Gene Family AT2G47070 54.8 1.7e-239 825.9
Mch8g2099 . 1 1015 SBP-box Gene Family AT3G60030 53.6 1.0e-278 956.4
Mch7g0067 . 15 163 SBP-box Gene Family AT5G50570 55.9 3.4e-41 166.0
Mch8g1392 . 46 160 SBP-box Gene Family AT5G50570 65.0 1.3e-37 154.1
Mch8g2099 . 179 1015 SBP-box Gene Family AT2G47070 54.8 1.7e-239 825.9
Mch8g2099 . 1 1015 SBP-box Gene Family AT3G60030 53.6 1.0e-278 956.4
Mch7g0067 . 15 163 SBP-box Gene Family AT5G50570 55.9 3.4e-41 166.0
Mch8g1392 . 46 160 SBP-box Gene Family AT5G50570 65.0 1.3e-37 154.1
Mch7g0067 . 15 163 SBP-box Gene Family AT5G50670 55.9 3.4e-41 166.0
Mch8g1392 . 46 160 SBP-box Gene Family AT5G50670 65.0 1.3e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006434 2 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 3 1 1 2 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43869 PF03110 SBP 3.70E-30 No_clan Mch TF