Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch8g1392 | ATGGATTGGGGTTTGGGAAAATTTTCTGGGGAAAAATCCGCTTTCCGGGAATCCAAACAGACCCCTCCTCCCCCTCCAAGTTTCTCCGATTCCATAGGTTCCAACAACGAAGAATCGAGCTCCTCCTCCCATGGATCCTCCAAAAGGACTCGTGTCCTCCATGGCACCCAGAATCAGACATGTTTGGTCGACGGCTGCGATTCGGACCTCAAAAATTGCAAGGATTACCACCGCCGCCATAGGGTCTGCGATTCCCACTCCAAAACCCCTGTTGTGATGGTCAGGGGAGAGGAGAAGCGATTCTGCCAACAGTGCAGCAGATTCCACTCGCTGGGTGAGTTCGATGAGGTGAAGAGAAGCTGCAGGAAACGGCTGGATGGCCACAATCGGCGCCGGAGAAAGCCTCAGCCGGAGTCCTTGATCTTCAGTTCCAGAGATTTCCTGTCCAATTGCAAAGGTCCAGTTTTGCTGCACTTCAGTGATCCAGCGGTTTATGGACCTGATATTGGTAAGACTCTGTGGCCTGTAAGAAGTGAGGAGAAAATGAAATCTATGGTTCCATCAAACTCCTTCAACTATGGAGGAGAGAACAAACAGTTGCCATTTTTCCTGCAGAGAAATGGCACAAAGCAAGGCAAGCAAATGGGTTCTTCTCAGTTGTTTTTCAATCAGCAACTTCCTGATACAATCTCTCTGGGAAGTGAAGTGGGCAGCCAGAAAATTCTGCCCACCAATCTCTCGCCCGAGGATTCAGGTTGTGCTCTCTATCTTCTGTCATCGCACCCGGTGCAAGCTCTCCCAGATTCTGGCCTGAGCTCTCTGGTTCAGTCCCATCTGGGTATTCCAGTCCAAACTCAAGACACTGAGCTGCTGCATTTCAGTAGCCTAAGTGACTTCTCTGGCTCCTTTGGCTCCAAAGACAAGCCTGTTTGTAAAACCAGCCTTCATGGTGAGTTGGTTCTTGAAATGGAGGAATCTGATGGCTTGTTCCACAGTGAGGCTCCACACAAGTTTCCCATTTCTTGGGAGTAG | 1032 | 49.9 | MDWGLGKFSGEKSAFRESKQTPPPPPSFSDSIGSNNEESSSSSHGSSKRTRVLHGTQNQTCLVDGCDSDLKNCKDYHRRHRVCDSHSKTPVVMVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLIFSSRDFLSNCKGPVLLHFSDPAVYGPDIGKTLWPVRSEEKMKSMVPSNSFNYGGENKQLPFFLQRNGTKQGKQMGSSQLFFNQQLPDTISLGSEVGSQKILPTNLSPEDSGCALYLLSSHPVQALPDSGLSSLVQSHLGIPVQTQDTELLHFSSLSDFSGSFGSKDKPVCKTSLHGELVLEMEESDGLFHSEAPHKFPISWE | 343 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 10364197 | 10366421 | + | MC08g1203 | Mch8g1392 | 695013 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch8g1392 | 343 | MobiDBLite | consensus disorder prediction | 30 | 53 | - | - | |
| Mch8g1392 | 343 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
| Mch8g1392 | 343 | Gene3D | - | 52 | 122 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Mch8g1392 | 343 | ProSiteProfiles | Zinc finger SBP-type profile. | 58 | 135 | IPR004333 | GO:0003677(InterPro) | |
| Mch8g1392 | 343 | SUPERFAMILY | SBT domain | 60 | 140 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Mch8g1392 | 343 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 18 | 221 | IPR044817 | GO:0003677(InterPro) | |
| Mch8g1392 | 343 | FunFam | Squamosa promoter-binding-like protein 14 | 52 | 122 | - | - | |
| Mch8g1392 | 343 | Pfam | SBP domain | 61 | 134 | IPR004333 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch3g1334 | Mch-Chr3:16093399 | Mch8g1392 | Mch-Chr8:10364197 | 4.39E-42 | dispersed | |
| Mch8g1392 | Mch-Chr8:10364197 | Mch8g2099 | Mch-Chr8:24026372 | 2.13E-29 | dispersed | |
| Mch6g0049 | Mch-Chr6:291451 | Mch8g1392 | Mch-Chr8:10364197 | 5.83E-47 | wgd | |
| Mch7g0067 | Mch-Chr7:649973 | Mch8g1392 | Mch-Chr8:10364197 | 8.43E-51 | wgd | |
| Mch8g1392 | Mch-Chr8:10364197 | Mch9g2377 | Mch-Chr9:23647717 | 2.41E-31 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43869 | PF03110 | SBP | 3.70E-30 | No_clan | Mch | TF |
Pathway information