Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1409 ATGCCGGAAGAAACCACTTCGATAGATTACGTCATGGAAGCAGCGTCTGGACCTCACTTCTCCGGCCTCCGACTCGACGGACTTATATCGCCTCCGCCTTCTTCCTCAACATCTTCTTCAGCTCCTCGCACTTCTTTTTCCACTTCCTCTGCACAGGCGGATTCCAACTCTCCCAAGCAGCCCTTCGTCATCGGTGTTTCTGGTGGTACTGCTTCTGGGAAGACGACGGTTTGTGACATGATTATCCAGCAACTCCATGATCACAGGGTTGTGCTGGTCAATCAGGACTCGTTTTACCGCGGATTGACAGCTGAGGAACTAGAACGTGTGCACGAGTATAACTTTGATCATCCTGATTCTTTTGACACCGAGCAGCTTGTGGATTGCGTCGAGAAGCTAAAGAGTGGGCAATCTTACCATGTCCCAATTTATGATTTTAAGACTCATCAACGCTGCATAGATAGCTTCCGACAGGTAAATGCATCTGATGTTATCATTGTGGAAGGTATTTTGGTTTTCCATGATCAGCGAGTCCGCAATCTGATGAACATGAAGATATTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACAGTAGAAAGGGGCAGGGACATTAACTCTGTTCTTGAACAGTATGCAAAATTTGTTAAGCCTGCTTTTGATGATTTCGTTCTGCCATCAAAGAAGTATGCCGATGTGATCATACCACGTGGGGGTGATAACCATGTTGCAATTGATTTGATTGTGCAACACATCCATACAAAGTTAGGCCAGCATGACCTATGCAAAATATATCCCACAGTTACTGTCATTCAGTCAACATTTCAGATACGAGGTATGCATACATTAATTCGAGACCGGGAAATTTCCAAGCATGATTTTGTGTTCTATTCGGATCGACTTATTCGTCTGGTTGTGGAGCACGGTCTTGGCCATTTACCATTTACTGAAAAACAAGTGGTCACTCCAACGGCATCTGTATATACTGGGGTTGATTTCTGCAAAAAACTATGTGGGGTATCCATTGTTCGAAGTGGGGAAAGCATGGAAAATGCGTTGCGAGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCACCGTGAGGGAGATAACGGACAGCAGCTGATATACGAGAAACTACCCAATGATATATCGGAGCGACATGTCCTACTCCTAGATCCCGTTCTCGCTACTGGTAACTCAGCTAATCAAGCAATTGATCTACTCATACAGAAGGGAGTTCCAGAATCACACATCATATTCCTCAATCTAATCTCTGCCCCCGAGGGAATCCACTGTGTTTGCAAACGATTCCCGTCCTTGAAAATTGTCACCTCTGAGATCGATGATGGATTGAACGATGAGTATCGTGTCATACCCGGATTGGGCGAATTCGGTGATCGTTACTTCGGGACTGATGATTAG 1449 44.93 MPEETTSIDYVMEAASGPHFSGLRLDGLISPPPSSSTSSSAPRTSFSTSSAQADSNSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCVEKLKSGQSYHVPIYDFKTHQRCIDSFRQVNASDVIIVEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPTVTVIQSTFQIRGMHTLIRDREISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISERHVLLLDPVLATGNSANQAIDLLIQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDDGLNDEYRVIPGLGEFGDRYFGTDD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10487868 10493561 - MC08g1218 Mch8g1409 695030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1409 482 PANTHER URIDINE KINASE 56 415 - GO:0005737(PANTHER)|GO:0009507(PANTHER)
Mch8g1409 482 FunFam Uridine kinase 58 264 - -
Mch8g1409 482 FunFam Uridine kinase 265 480 - -
Mch8g1409 482 MobiDBLite consensus disorder prediction 22 62 - -
Mch8g1409 482 CDD UMPK 63 261 IPR000764 -
Mch8g1409 482 PRINTS Uridine kinase signature 91 102 - -
Mch8g1409 482 PRINTS Uridine kinase signature 207 218 - -
Mch8g1409 482 PRINTS Uridine kinase signature 193 203 - -
Mch8g1409 482 PRINTS Uridine kinase signature 229 242 - -
Mch8g1409 482 PRINTS Uridine kinase signature 61 78 - -
Mch8g1409 482 PRINTS Uridine kinase signature 136 151 - -
Mch8g1409 482 Gene3D - 265 480 IPR029057 -
Mch8g1409 482 Gene3D - 57 264 IPR027417 -
Mch8g1409 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Mch8g1409 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
Mch8g1409 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 254 IPR027417 -
Mch8g1409 482 MobiDBLite consensus disorder prediction 30 62 - -
Mch8g1409 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Mch8g1409 482 NCBIfam uridine kinase 60 261 IPR000764 -
Mch8g1409 482 CDD PRTases_typeI 338 453 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1409 K00876 - - csv:101207261 888.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1313 Mch-Chr11:9300783 Mch8g1409 Mch-Chr8:10487868 2.65E-230 dispersed
Mch1g0681 Mch-Chr1:10855818 Mch8g1409 Mch-Chr8:10487868 2.23E-19 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0468 . 33 189 PRT Gene Family AT1G80050 79.0 1.8e-66 248.8
Mch6g1768 . 30 180 PRT Gene Family AT1G80050 76.2 4.1e-63 237.7
Mch8g0637 . 102 251 PRT Gene Family AT1G80050 69.3 3.2e-55 211.5
Mch10g1539 . 30 145 PRT Gene Family AT1G80050 77.6 2.0e-46 182.2
Mch8g0468 . 1 148 PRT Gene Family AT5G11160 81.1 1.7e-64 242.3
Mch6g1768 . 8 145 PRT Gene Family AT5G11160 75.4 1.1e-55 213.0
Mch8g0637 . 80 217 PRT Gene Family AT5G11160 71.7 1.1e-53 206.5
Mch10g1539 . 8 145 PRT Gene Family AT5G11160 72.5 2.6e-52 201.8
Mch8g0637 . 73 256 PRT Gene Family AT1G27450 82.6 7.7e-82 300.1
Mch6g1768 . 7 180 PRT Gene Family AT1G27450 73.6 2.1e-71 265.4
Mch8g0468 . 11 183 PRT Gene Family AT1G27450 69.4 5.4e-67 250.8
Mch10g1539 . 7 145 PRT Gene Family AT1G27450 79.1 1.6e-58 222.6
Mch2g1060 . 67 550 PRT Gene Family AT2G16570 84.6 7.8e-242 833.2
Mch2g1060 . 56 550 PRT Gene Family AT4G34740 83.5 2.0e-242 835.1
Mch2g1060 . 24 523 PRT Gene Family AT4G38880 70.1 3.1e-200 694.9
Mch8g0637 . 73 256 PRT Gene Family AT1G27450 82.6 7.7e-82 300.1
Mch6g1768 . 7 180 PRT Gene Family AT1G27450 73.6 2.1e-71 265.4
Mch8g0468 . 11 183 PRT Gene Family AT1G27450 69.4 5.4e-67 250.8
Mch10g1539 . 7 145 PRT Gene Family AT1G27450 79.1 1.6e-58 222.6
Mch8g0468 . 33 189 PRT Gene Family AT1G80050 79.0 1.8e-66 248.8
Mch6g1768 . 30 180 PRT Gene Family AT1G80050 76.2 4.1e-63 237.7
Mch8g0637 . 102 251 PRT Gene Family AT1G80050 69.3 3.2e-55 211.5
Mch10g1539 . 30 145 PRT Gene Family AT1G80050 77.6 2.0e-46 182.2
Mch10g1539 . 5 104 PRT Gene Family AT4G22570 81.0 3.1e-43 171.0
Mch6g1768 . 6 104 PRT Gene Family AT4G22570 79.8 6.9e-43 169.9
Mch8g0637 . 77 169 PRT Gene Family AT4G22570 80.6 1.6e-39 158.7
Mch8g0468 . 11 100 PRT Gene Family AT4G22570 78.9 2.0e-37 151.8
Mch10g1539 . 1 96 PRT Gene Family AT4G12440 83.3 3.8e-40 160.6
Mch6g1768 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.1
Mch8g0637 . 73 168 PRT Gene Family AT4G12440 78.1 1.4e-37 152.1
Mch8g0468 . 4 99 PRT Gene Family AT4G12440 78.1 3.0e-37 151.0
Mch8g0468 . 1 148 PRT Gene Family AT5G11160 81.1 1.7e-64 242.3
Mch6g1768 . 8 145 PRT Gene Family AT5G11160 75.4 1.1e-55 213.0
Mch8g0637 . 80 217 PRT Gene Family AT5G11160 71.7 1.1e-53 206.5
Mch10g1539 . 8 145 PRT Gene Family AT5G11160 72.5 2.6e-52 201.8
Mch4g1915 . 1 186 PRT Gene Family AT1G71750 64.5 2.6e-67 251.9
Mch11g1313 . 16 447 PRT Gene Family AT1G55810 79.8 1.6e-205 712.2
Mch8g1409 . 19 482 PRT Gene Family AT1G55810 74.4 8.2e-202 699.9
Mch8g1409 . 80 482 PRT Gene Family AT3G27440 75.4 8.2e-180 626.7
Mch11g1313 . 66 455 PRT Gene Family AT3G27440 68.7 1.6e-162 569.3
Mch8g1409 . 1 483 PRT Gene Family AT3G27190 86.0 7.6e-246 846.3
Mch11g1313 . 3 446 PRT Gene Family AT3G27190 69.3 1.0e-189 659.8
Mch1g0681 . 3 287 PRT Gene Family AT3G53900 66.9 3.3e-106 381.7
Mch8g1409 . 7 482 PRT Gene Family AT4G26510 75.4 1.4e-212 735.7
Mch11g1313 . 1 447 PRT Gene Family AT4G26510 78.3 1.8e-212 735.3
Mch8g1409 . 1 482 PRT Gene Family AT5G40870 86.5 8.2e-248 852.8
Mch11g1313 . 3 449 PRT Gene Family AT5G40870 68.2 3.9e-189 657.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61