Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1481 ATGGCGGGTCTTGAGGAACTAAAGAAGAAGCTTACTCCCTTGTTTGACGCTGAAAAGGGGCTTTCTATGGATTCCACTGTGGACCCTTCTGATTCCTATACGTTTTCAGATACTGGGACTGTGAATCTGCTGAGCCGATCGTATGGGGTTTACAATATTAATGAGCTAGGGTTACAAAAATGCACATCTAGTGAGAGGACGTATCGATGTGCTTCCCATGAAATGAGAATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCATTGAAGAAGATCAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACATTATGTGAAGCCCCATGTTCGGAGGGTCTGGTGGAATTTCATGGTGCGTTTTATACCCCTGACTCTGGCCAAATAAGCATAGCTTTGGAGTACATGGATGGAGGGTCGTTAGCAGATGTCCTGCGTTTGAAGAAATGTATACCTGAGCCTGTCCTTTCGTCTATGTTTCAAAAACTTCTTCATGGACTAAATTACCTACATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTCGTAAATCTAAAGGGTGAAGCAAAAATTACAGATTTTGGCATAAGTGCTGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTTGTTGGAACTGTCACATACATGTCACCCGAGCGAATTCGAAATGAGAACTATTCTTATCCAGCTGATATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGCCTAGTGAATCTTATGTTGCAGATTTTGGATGACCCATCTCCGTCGCCATCAAAACAGAAATTTTCACCAGAGTTTTGTTCATTCGTCGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACGGCAGAGCAGCTGCTTTCACACCCATTTATCAAGAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTACAGAGTGTGTTTGATCCAATACAGAGGATGAAGGACTTGGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGAATTCTGGCACCATTCAAAAGCTTTGTACAATGAAAGCTCAACTTTGAGTTTTTCAGGGAAGCAATTTTCTGGTCCAAATGACATCTTTTCCACTCTATCAGACATTCGAAATACGTTAGCCGGGGACTGGCCTCTCGAAAAACTAGTTCATGTCGTTGAAAAACTCCAATGTCGAGCTCACGGTCGAGATGGAATCGCCATAAGGGTGTCAGGATCCTTCATCATCGGTAACCAGTTCCTCATATGTGGAGACGGAGTACAAGTCGAGGGACTGCCAAATTTCAAGGATCTCTCCATCGACGTTTCGAGTAAAAGAATGGGATCCTTCCGGGAGCAGTTCATCATCGAACCGAGCAACCTCATCGGTCGATACTACATAGCCAAACAAGAGCTTTATATAATTCAATAA 1533 42.79 MAGLEELKKKLTPLFDAEKGLSMDSTVDPSDSYTFSDTGTVNLLSRSYGVYNINELGLQKCTSSERTYRCASHEMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLHGLNYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNENYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKQKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYEDEQVDLAAFVQSVFDPIQRMKDLADMLTIHYYLLFDGPDEFWHHSKALYNESSTLSFSGKQFSGPNDIFSTLSDIRNTLAGDWPLEKLVHVVEKLQCRAHGRDGIAIRVSGSFIIGNQFLICGDGVQVEGLPNFKDLSIDVSSKRMGSFREQFIIEPSNLIGRYYIAKQELYIIQ 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11163807 11172651 - MC08g1276 Mch8g1481 695102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1481 510 SMART serkin_6 75 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1481 510 FunFam Mitogen-activated protein kinase kinase 3 355 509 - -
Mch8g1481 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g1481 510 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524(InterPro)
Mch8g1481 510 Gene3D Phosphorylase Kinase; domain 1 54 156 - -
Mch8g1481 510 ProSiteProfiles Nuclear transport factor 2 domain profile. 358 508 IPR018222 -
Mch8g1481 510 FunFam mitogen-activated protein kinase kinase 3 157 353 - -
Mch8g1481 510 SUPERFAMILY NTF2-like 356 508 IPR032710 -
Mch8g1481 510 FunFam mitogen-activated protein kinase kinase 3 49 156 - -
Mch8g1481 510 SUPERFAMILY Protein kinase-like (PK-like) 77 369 IPR011009 -
Mch8g1481 510 Pfam Protein kinase domain 79 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g1481 510 Gene3D - 358 508 - -
Mch8g1481 510 CDD PKc_MAPKK_plant_like 76 335 - -
Mch8g1481 510 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 55 364 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Mch8g1481 510 Gene3D Transferase(Phosphotransferase) domain 1 157 357 - -
Mch8g1481 510 ProSiteProfiles Protein kinase domain profile. 75 331 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1481 K20607 - - csv:101217978 958.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1018 Mch-Chr8:7204547 Mch8g1481 Mch-Chr8:11163807 1.36E-43 dispersed
Mch8g1481 Mch-Chr8:11163807 Mch8g3186 Mch-Chr8:34037596 1.98E-78 dispersed
Mch8g1481 Mch-Chr8:11163807 Mch8g3227 Mch-Chr8:34329790 9.30E-76 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0943 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 69.6 3.6e-133 471.5
Mch8g3227 . 28 352 MAP Kinase Kinase Gene Family AT4G26070 66.6 2.1e-125 445.7
Mch8g3186 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.9 6.2e-109 391.0
Mch6g0943 . 1 324 MAP Kinase Kinase Gene Family AT4G29810 69.5 1.2e-133 473.0
Mch8g3227 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 62.5 4.7e-117 417.9
Mch8g3186 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 60.0 1.1e-110 396.7
Mch8g1481 . 36 510 MAP Kinase Kinase Gene Family AT5G40440 79.3 9.7e-228 786.2
Mch8g1018 . 1 371 MAP Kinase Kinase Gene Family AT1G51660 64.9 7.0e-127 450.7
Mch8g1018 . 1 371 MAP Kinase Kinase Gene Family AT3G21220 65.1 3.0e-127 451.8
Mch3g1570 . 39 310 MAP Kinase Kinase Gene Family AT3G21220 54.8 4.9e-85 311.6
Mch8g3186 . 1 355 MAP Kinase Kinase Gene Family AT5G56580 84.8 3.1e-172 601.3
Mch6g0943 . 10 350 MAP Kinase Kinase Gene Family AT5G56580 58.5 2.9e-117 418.7
Mch8g3227 . 1 341 MAP Kinase Kinase Gene Family AT5G56580 56.9 6.4e-109 391.0
Mch3g1570 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 62.7 8.0e-108 387.1
Mch8g1018 . 73 339 MAP Kinase Kinase Gene Family AT1G18350 51.5 9.6e-77 283.9
Mch3g1570 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 52.6 4.2e-82 301.6
Mch3g1570 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 65.4 4.4e-114 407.9
Mch8g1018 . 80 339 MAP Kinase Kinase Gene Family AT1G73500 52.1 7.4e-77 284.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77611 PF00069 Pkinase 6.30E-60 CL0016 Mch PK